IDEAS home Printed from https://ideas.repec.org/a/caa/jnlcjg/v59y2023i1id38-2022-cjgpb.html
   My bibliography  Save this article

Genetic diversity and proteomic analysis of vegetable soybean (Glycine max (L.) Merrill) accessions grown in mineral and BRIS soils

Author

Listed:
  • Nor Hafizah Zakaria

    (Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia)

  • Mohd Shukor Nordin

    (Department of Plant Science, Kulliyyah of Science, International Islamic University Malaysia (IIUM), Kuantan, Pahang, Malaysia)

  • Maizatul Akma Ibrahim

    (Department of Plant Science, Kulliyyah of Science, International Islamic University Malaysia (IIUM), Kuantan, Pahang, Malaysia
    Plant Productivity and Sustainable Resource Unit, Department of Plant Science, Kulliyyah of Science, International Islamic University Malaysia (IIUM), Kuantan, Pahang, Malaysia)

  • Fadzilah Adibah Abdul Majid

    (Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia)

  • Zarina Zainuddin

    (Department of Plant Science, Kulliyyah of Science, International Islamic University Malaysia (IIUM), Kuantan, Pahang, Malaysia
    Plant Productivity and Sustainable Resource Unit, Department of Plant Science, Kulliyyah of Science, International Islamic University Malaysia (IIUM), Kuantan, Pahang, Malaysia)

Abstract

Knowledge of the molecular mechanisms of response to environmental stress is fundamental for the development of genetically stress-tolerant crops. This study aims to find vegetable soybean accessions tolerant to cultivation in stressful tropical environments. Fourteen accessions of the vegetable soybean (Glycine max (L.) Merrill) were grown in mineral and beach ridges interspersed with swale (BRIS) soils. The genetic diversity, estimated using inter-simple sequence repeat (ISSR) markers, revealed 42.50% polymorphism and was regarded as moderate. The unweighted pair-group method arithmetic average (UPGMA) analysis allocated the tested accessions into five major clusters at a similarity coefficient level of 0.43. The lowest values of the genetic distance were between IIUMSOY11 and IIUMSOY13 & IIUMSOY13 and IIUMSOY14, indicating that these accessions were more genetically distant from the other accessions. Ten differentially expressed proteins were identified in the three selected accessions IIUMSOY1, IIUMSOY11 and IIUMSOY14 using mass spectrometry, revealing a unique expression of the proteins involved in the storage, flavonoid metabolism, protein modification, oxidative stress defence, carbohydrate metabolism and respiratory chain. The findings may be valuable for the selection of genetically diverse accessions, to enhance the breeding of vegetable soybean genotypes suitable for stressful tropical environments.

Suggested Citation

  • Nor Hafizah Zakaria & Mohd Shukor Nordin & Maizatul Akma Ibrahim & Fadzilah Adibah Abdul Majid & Zarina Zainuddin, 2023. "Genetic diversity and proteomic analysis of vegetable soybean (Glycine max (L.) Merrill) accessions grown in mineral and BRIS soils," Czech Journal of Genetics and Plant Breeding, Czech Academy of Agricultural Sciences, vol. 59(1), pages 14-22.
    • Handle: RePEc:caa:jnlcjg:v:59:y:2023:i:1:id:38-2022-cjgpb
    DOI: 10.17221/38/2022-CJGPB
    as

    Download full text from publisher

    File URL: http://cjgpb.agriculturejournals.cz/doi/10.17221/38/2022-CJGPB.html
    Download Restriction: free of charge
    File URL: http://cjgpb.agriculturejournals.cz/doi/10.17221/38/2022-CJGPB.pdf
    Download Restriction: free of charge
    File URL: https://libkey.io/10.17221/38/2022-CJGPB?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Kaili Yang & Yiqing Qing & Qifang Yu & Xiaopeng Tang & Gang Chen & Rejun Fang & Hu Liu, 2021. "By-Product Feeds: Current Understanding and Future Perspectives," Agriculture, MDPI, vol. 11(3), pages 1-19, March.
    2. Abdul Shakoor & Gul Zaib & Fang Zhao & Wuyang Li & Xincan Lan & Somayeh Esfandani-Bozchaloyi, 2022. "ISSR markers and morphometry determine genetic diversity and population structure in Hedera helix L," Czech Journal of Genetics and Plant Breeding, Czech Academy of Agricultural Sciences, vol. 58(2), pages 73-82.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Herniwati Herniwati & Marcia Bunga Pabendon & Karuniawan Puji Wicaksono & Budi Waluyo & Eko Widaryanto, 2024. "Estimation of genetic diversity of sweet sorghum (Sorghum bicolor (L.) Moench) genotypes as a bioethanol source using SSRs markers," Czech Journal of Genetics and Plant Breeding, Czech Academy of Agricultural Sciences, vol. 60(2), pages 86-96.
    2. repec:caa:jnlcjg:v:preprint:id:79-2023-cjgpb is not listed on IDEAS

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Herniwati Herniwati & Marcia Bunga Pabendon & Karuniawan Puji Wicaksono & Budi Waluyo & Eko Widaryanto, 2024. "Estimation of genetic diversity of sweet sorghum (Sorghum bicolor (L.) Moench) genotypes as a bioethanol source using SSRs markers," Czech Journal of Genetics and Plant Breeding, Czech Academy of Agricultural Sciences, vol. 60(2), pages 86-96.
    2. repec:caa:jnlcjg:v:preprint:id:79-2023-cjgpb is not listed on IDEAS

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:caa:jnlcjg:v:59:y:2023:i:1:id:38-2022-cjgpb. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Ivo Andrle (email available below). General contact details of provider: https://www.cazv.cz/en/home/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.