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Shrunken p-Values for Assessing Differential Expression with Applications to Genomic Data Analysis

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  • Debashis Ghosh

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  • Debashis Ghosh, 2006. "Shrunken p-Values for Assessing Differential Expression with Applications to Genomic Data Analysis," Biometrics, The International Biometric Society, vol. 62(4), pages 1099-1106, December.
    • Handle: RePEc:bla:biomet:v:62:y:2006:i:4:p:1099-1106
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    File URL: http://hdl.handle.net/10.1111/j.1541-0420.2006.00616.x
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    References listed on IDEAS

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    1. Bickel David R., 2004. "Error-Rate and Decision-Theoretic Methods of Multiple Testing: Which Genes Have High Objective Probabilities of Differential Expression?," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 3(1), pages 1-22, May.
    2. John D. Storey & Jonathan E. Taylor & David Siegmund, 2004. "Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 66(1), pages 187-205, February.
    3. van der Laan Mark J. & Dudoit Sandrine & Pollard Katherine S., 2004. "Augmentation Procedures for Control of the Generalized Family-Wise Error Rate and Tail Probabilities for the Proportion of False Positives," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 3(1), pages 1-27, June.
    4. Mark van der Laan & Sandrine Dudoit & Katherine Pollard, 2004. "Multiple Testing. Part III. Procedures for Control of the Generalized Family-Wise Error Rate and Proportion of False Positives," U.C. Berkeley Division of Biostatistics Working Paper Series 1140, Berkeley Electronic Press.
    5. Youngchao Ge & Sandrine Dudoit & Terence Speed, 2003. "Resampling-based multiple testing for microarray data analysis," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 12(1), pages 1-77, June.
    6. John D. Storey, 2002. "A direct approach to false discovery rates," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(3), pages 479-498, August.
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    Cited by:

    1. Montazeri Zahra & Yanofsky Corey M. & Bickel David R., 2010. "Shrinkage Estimation of Effect Sizes as an Alternative to Hypothesis Testing Followed by Estimation in High-Dimensional Biology: Applications to Differential Gene Expression," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-33, June.
    2. David R. Bickel, 2011. "Estimating the Null Distribution to Adjust Observed Confidence Levels for Genome-Scale Screening," Biometrics, The International Biometric Society, vol. 67(2), pages 363-370, June.
    3. Bickel David R., 2008. "Correcting the Estimated Level of Differential Expression for Gene Selection Bias: Application to a Microarray Study," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 7(1), pages 1-27, March.

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