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Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods

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  • Bob Mau
  • Michael A. Newton
  • Bret Larget

Abstract

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Suggested Citation

  • Bob Mau & Michael A. Newton & Bret Larget, 1999. "Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods," Biometrics, The International Biometric Society, vol. 55(1), pages 1-12, March.
    • Handle: RePEc:bla:biomet:v:55:y:1999:i:1:p:1-12
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    File URL: http://hdl.handle.net/10.1111/j.0006-341X.1999.00001.x
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    Cited by:

    1. Elena Rivas & Sean R Eddy, 2008. "Probabilistic Phylogenetic Inference with Insertions and Deletions," PLOS Computational Biology, Public Library of Science, vol. 4(9), pages 1-21, September.
    2. Alexandra Gavryushkina & David Welch & Tanja Stadler & Alexei J Drummond, 2014. "Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration," PLOS Computational Biology, Public Library of Science, vol. 10(12), pages 1-15, December.
    3. Ian J. Wilson & Michael E. Weale & David J. Balding, 2003. "Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 166(2), pages 155-188, June.
    4. Barry G Hall & Stephen J Salipante, 2007. "Measures of Clade Confidence Do Not Correlate with Accuracy of Phylogenetic Trees," PLOS Computational Biology, Public Library of Science, vol. 3(3), pages 1-9, March.
    5. Lin, Yu-Min & Fang, Shu-Cherng & Thorne, Jeffrey L., 2007. "A tabu search algorithm for maximum parsimony phylogeny inference," European Journal of Operational Research, Elsevier, vol. 176(3), pages 1908-1917, February.
    6. Rigat, F. & Mira, A., 2012. "Parallel hierarchical sampling: A general-purpose interacting Markov chains Monte Carlo algorithm," Computational Statistics & Data Analysis, Elsevier, vol. 56(6), pages 1450-1467.
    7. Jordan Douglas & Rong Zhang & Remco Bouckaert, 2021. "Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model," PLOS Computational Biology, Public Library of Science, vol. 17(2), pages 1-30, February.
    8. Spade David A., 2020. "An extended model for phylogenetic maximum likelihood based on discrete morphological characters," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 19(1), pages 1-11, February.

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