IDEAS home Printed from https://ideas.repec.org/p/zbw/sfb475/200223.html
   My bibliography  Save this paper

Application of hidden Markov models for the identification of short protein repeats

Author

Listed:
  • Bongardt, Friedhelm
  • Vetter, Ingrid
  • Urfer, Wolfgang

Abstract

In this paper, hidden Markov models (HMMs) are discussed in the context of molecular biological sequence analysis. The statistics relevant in the HMM approach are described in detail. An HMM based method is used to analyze two proteins that contain short protein repeats (SPRs). As a benchmark, a state-ofthe- art program for the detection of SPRs is also used for both proteins. Finally, an outlook for combination possibilities of HMMs with phylogenetic approaches is given.

Suggested Citation

  • Bongardt, Friedhelm & Vetter, Ingrid & Urfer, Wolfgang, 2002. "Application of hidden Markov models for the identification of short protein repeats," Technical Reports 2002,23, Technische Universität Dortmund, Sonderforschungsbereich 475: Komplexitätsreduktion in multivariaten Datenstrukturen.
    • Handle: RePEc:zbw:sfb475:200223
    as

    Download full text from publisher

    File URL: https://www.econstor.eu/bitstream/10419/77293/2/2002-23.pdf
    Download Restriction: no
    ---><---

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:zbw:sfb475:200223. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no bibliographic references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ZBW - Leibniz Information Centre for Economics (email available below). General contact details of provider: https://edirc.repec.org/data/isdorde.html .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.