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F-BIAS: Towards a distributed national core facility for Bioimage Analysis

Author

Listed:
  • Mélodie Ambroset

    (BioCore - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique - CHU Nantes - Centre Hospitalier Universitaire de Nantes = Nantes University Hospital - Nantes Univ - Nantes Université)

  • Marie Anselmet

    (IAH - Hub d'analyse d'images - Image Analysis Hub (Platform) - IP - Institut Pasteur [Paris] - UPCité - Université Paris Cité)

  • Clément Benedetti

    (BCM - BioCampus - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique - UM - Université de Montpellier)

  • Arthur Meslin

    (PICT-IBiSA - BioImaging Cell and Tissue Core Facility - Institut Curie [Paris])

  • Aurélien Maillot

    (Génétique et Biologie du Développement - Institut Curie [Paris] - INSERM - Institut National de la Santé et de la Recherche Médicale - SU - Sorbonne Université - CNRS - Centre National de la Recherche Scientifique)

  • Christian Rouvière

    (CBI - Centre de Biologie Intégrative - UT3 - Université Toulouse III - Paul Sabatier - UT - Université de Toulouse - CNRS - Centre National de la Recherche Scientifique)

  • Guillaume Maucort

    (BIC - Bordeaux Imaging Center - UB - Université de Bordeaux - Institut François Magendie - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique)

  • Marine Breuilly

    (Santé Lyon Est - Louis Léopold Ollier - UCBL - Université Claude Bernard Lyon 1 - Université de Lyon - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique)

  • Marvin Albert

    (IAH - Hub d'analyse d'images - Image Analysis Hub (Platform) - IP - Institut Pasteur [Paris] - UPCité - Université Paris Cité)

  • Gaëlle Letort

    (Département de Biologie du Développement et Cellules souches - Department of Developmental and Stem Cell Biology - IP - Institut Pasteur [Paris] - UPCité - Université Paris Cité)

  • Antonio Trullo

    (IGMM - Institut de Génétique Moléculaire de Montpellier - CNRS - Centre National de la Recherche Scientifique - UM - Université de Montpellier)

  • Volker Bäcker

    (BCM - BioCampus - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique - UM - Université de Montpellier)

  • Jérôme Mutterer

    (IBMP - Institut de Biologie Moléculaire des Plantes - UNISTRA - Université de Strasbourg - CNRS - Centre National de la Recherche Scientifique)

  • Fabrice Cordelières

    (BIC - Bordeaux Imaging Center - UB - Université de Bordeaux - Institut François Magendie - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique)

  • Thierry Pécot

    (SFR UMS CNRS 3480 - INSERM 018 - Biosit : biologie, santé, innovation technologique - UR - Université de Rennes - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique - Biosit : Biologie - Santé - Innovation Technologique - Structure Fédérative de Recherche en Biologie et Santé de Rennes)

  • Minh-Son Phan

    (IAH - Hub d'analyse d'images - Image Analysis Hub (Platform) - IP - Institut Pasteur [Paris] - UPCité - Université Paris Cité)

  • Stéphane Rigaud

    (IAH - Hub d'analyse d'images - Image Analysis Hub (Platform) - IP - Institut Pasteur [Paris] - UPCité - Université Paris Cité)

  • Magali Feyeux

    (BioCore - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique - CHU Nantes - Centre Hospitalier Universitaire de Nantes = Nantes University Hospital - Nantes Univ - Nantes Université)

  • Perrine Paul-Gilloteaux

    (BioCore - INSERM - Institut National de la Santé et de la Recherche Médicale - CNRS - Centre National de la Recherche Scientifique - CHU Nantes - Centre Hospitalier Universitaire de Nantes = Nantes University Hospital - Nantes Univ - Nantes Université)

  • Anne-Sophie Macé

    (PICT-IBiSA - BioImaging Cell and Tissue Core Facility - Institut Curie [Paris])

  • Jean-Yves Tinevez

    (IAH - Hub d'analyse d'images - Image Analysis Hub (Platform) - IP - Institut Pasteur [Paris] - UPCité - Université Paris Cité)

Abstract

We discuss in this article the creation and organization of a national core facility for bioimage analysis, based on a distributed team. F-BIAS federates bioimage analysts across France and relies on them to deliver services to the researchers of this territory. The main challenge in implementing this structure is to provide significant scientific value to its members, thereby encouraging their active participation and persuading their respective host teams to support their involvement. F-BIAS accomplished this by creating a professional network that mitigates the negative effects of isolation experienced by its members, who are often the sole bioimage analyst within their local teams, and fosters the development of their technical skills. In a second phase we capitalized on F-BIAS to create a virtual, remotely-operating core facility for bioimage analysis, offering consultations and collaborative project services to the scientific community of France. The services are organized so that they also contribute to the technical proficiency of the analysts. To promote the creation of similar structures, we present and discuss here the organization of this nationally distributed bioimage analysis service core, highlighting successes and challenges.

Suggested Citation

  • Mélodie Ambroset & Marie Anselmet & Clément Benedetti & Arthur Meslin & Aurélien Maillot & Christian Rouvière & Guillaume Maucort & Marine Breuilly & Marvin Albert & Gaëlle Letort & Antonio Trullo & V, 2024. "F-BIAS: Towards a distributed national core facility for Bioimage Analysis," Working Papers hal-04707549, HAL.
  • Handle: RePEc:hal:wpaper:hal-04707549
    DOI: 10.48550/arXiv.2409.15009
    as

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