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Using Stata with PHASE and Haploview: Commands for importing and exporting data

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  • J. Charles Huber Jr.

    (Texas A&M Health Science Center School of Rural Public Health)

Abstract

Modern genetics studies require the use of many specialty software programs for various aspects of the statistical analysis. PHASE is a program often used to reconstruct haplotypes from genotype data, and Haploview is a program often used to visualize and analyze single nucleotide polymorphism data. Three new commands are described for performing these three steps: 1) exporting geno- type data stored in Stata to PHASE, 2) importing the resulting inferred haplotypes back into Stata, and 3) exporting the haplotype/single nucleotide polymorphism data from Stata to Haploview. Copyright 2010 by StataCorp LP.

Suggested Citation

  • J. Charles Huber Jr., 2010. "Using Stata with PHASE and Haploview: Commands for importing and exporting data," Stata Journal, StataCorp LP, vol. 10(3), pages 359-368, September.
    • Handle: RePEc:tsj:stataj:v:10:y:2010:i:3:p:359-368
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