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The Spike-and-Slab LASSO

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  • Veronika Ročková
  • Edward I. George

Abstract

Despite the wide adoption of spike-and-slab methodology for Bayesian variable selection, its potential for penalized likelihood estimation has largely been overlooked. In this article, we bridge this gap by cross-fertilizing these two paradigms with the Spike-and-Slab LASSO procedure for variable selection and parameter estimation in linear regression. We introduce a new class of self-adaptive penalty functions that arise from a fully Bayes spike-and-slab formulation, ultimately moving beyond the separable penalty framework. A virtue of these nonseparable penalties is their ability to borrow strength across coordinates, adapt to ensemble sparsity information and exert multiplicity adjustment. The Spike-and-Slab LASSO procedure harvests efficient coordinate-wise implementations with a path-following scheme for dynamic posterior exploration. We show on simulated data that the fully Bayes penalty mimics oracle performance, providing a viable alternative to cross-validation. We develop theory for the separable and nonseparable variants of the penalty, showing rate-optimality of the global mode as well as optimal posterior concentration when p > n. Supplementary materials for this article are available online.

Suggested Citation

  • Veronika Ročková & Edward I. George, 2018. "The Spike-and-Slab LASSO," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 113(521), pages 431-444, January.
  • Handle: RePEc:taf:jnlasa:v:113:y:2018:i:521:p:431-444
    DOI: 10.1080/01621459.2016.1260469
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    Cited by:

    1. Sierra A. Bainter & Thomas G. McCauley & Mahmoud M. Fahmy & Zachary T. Goodman & Lauren B. Kupis & J. Sunil Rao, 2023. "Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology," Psychometrika, Springer;The Psychometric Society, vol. 88(3), pages 1032-1055, September.
    2. Lee, Juyong & Reiner, David M., 2023. "Determinants of public preferences on low-carbon energy sources: Evidence from the United Kingdom," Energy, Elsevier, vol. 284(C).
    3. Yinghan Chen & Steven Andrew Culpepper & Yuguo Chen, 2023. "Bayesian Inference for an Unknown Number of Attributes in Restricted Latent Class Models," Psychometrika, Springer;The Psychometric Society, vol. 88(2), pages 613-635, June.
    4. Mogliani, Matteo & Simoni, Anna, 2021. "Bayesian MIDAS penalized regressions: Estimation, selection, and prediction," Journal of Econometrics, Elsevier, vol. 222(1), pages 833-860.
    5. M. Marsman & K. Huth & L. J. Waldorp & I. Ntzoufras, 2022. "Objective Bayesian Edge Screening and Structure Selection for Ising Networks," Psychometrika, Springer;The Psychometric Society, vol. 87(1), pages 47-82, March.
    6. Byrd, Michael & Nghiem, Linh H. & McGee, Monnie, 2021. "Bayesian regularization of Gaussian graphical models with measurement error," Computational Statistics & Data Analysis, Elsevier, vol. 156(C).
    7. Niesert, Robin F. & Oorschot, Jochem A. & Veldhuisen, Christian P. & Brons, Kester & Lange, Rutger-Jan, 2020. "Can Google search data help predict macroeconomic series?," International Journal of Forecasting, Elsevier, vol. 36(3), pages 1163-1172.
    8. Wang, Xiaoqing & Feng, Xiangnan & Song, Xinyuan, 2020. "Joint analysis of semicontinuous data with latent variables," Computational Statistics & Data Analysis, Elsevier, vol. 151(C).
    9. Parley R Yang & Alexander Y Shestopaloff, 2024. "Low Volatility Stock Portfolio Through High Dimensional Bayesian Cointegration," Papers 2407.10175, arXiv.org.
    10. Posch, Konstantin & Arbeiter, Maximilian & Pilz, Juergen, 2020. "A novel Bayesian approach for variable selection in linear regression models," Computational Statistics & Data Analysis, Elsevier, vol. 144(C).
    11. Banerjee, Sayantan, 2022. "Horseshoe shrinkage methods for Bayesian fusion estimation," Computational Statistics & Data Analysis, Elsevier, vol. 174(C).
    12. Fan, Jianqing & Jiang, Bai & Sun, Qiang, 2022. "Bayesian factor-adjusted sparse regression," Journal of Econometrics, Elsevier, vol. 230(1), pages 3-19.
    13. Zhang, Ruoyang & Ghosh, Malay, 2022. "Ultra high-dimensional multivariate posterior contraction rate under shrinkage priors," Journal of Multivariate Analysis, Elsevier, vol. 187(C).
    14. Dimitris Korobilis & Kenichi Shimizu, 2022. "Bayesian Approaches to Shrinkage and Sparse Estimation," Foundations and Trends(R) in Econometrics, now publishers, vol. 11(4), pages 230-354, June.
    15. Tanin Sirimongkolkasem & Reza Drikvandi, 2019. "On Regularisation Methods for Analysis of High Dimensional Data," Annals of Data Science, Springer, vol. 6(4), pages 737-763, December.
    16. Minerva Mukhopadhyay & David B. Dunson, 2020. "Targeted Random Projection for Prediction From High-Dimensional Features," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 115(532), pages 1998-2010, December.
    17. Hu, Guanyu, 2021. "Spatially varying sparsity in dynamic regression models," Econometrics and Statistics, Elsevier, vol. 17(C), pages 23-34.
    18. Pereira, Luz Adriana & Gutiérrez, Luis & Taylor-Rodríguez, Daniel & Mena, Ramsés H., 2023. "Bayesian nonparametric hypothesis testing for longitudinal data analysis," Computational Statistics & Data Analysis, Elsevier, vol. 179(C).
    19. Gonzalo García-Donato & María Eugenia Castellanos & Alicia Quirós, 2021. "Bayesian Variable Selection with Applications in Health Sciences," Mathematics, MDPI, vol. 9(3), pages 1-16, January.
    20. Okudo, Michiko & Komaki, Fumiyasu, 2021. "Shrinkage priors for single-spiked covariance models," Statistics & Probability Letters, Elsevier, vol. 176(C).
    21. Posch, Konstantin & Truden, Christian & Hungerländer, Philipp & Pilz, Jürgen, 2022. "A Bayesian approach for predicting food and beverage sales in staff canteens and restaurants," International Journal of Forecasting, Elsevier, vol. 38(1), pages 321-338.
    22. Richard K. Crump & Nikolay Gospodinov & Hunter Wieman, 2023. "Sparse Trend Estimation," Staff Reports 1049, Federal Reserve Bank of New York.
    23. Kshitij Khare & Malay Ghosh, 2022. "MCMC Convergence for Global-Local Shrinkage Priors," Journal of Quantitative Economics, Springer;The Indian Econometric Society (TIES), vol. 20(1), pages 211-234, September.

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