IDEAS home Printed from https://ideas.repec.org/a/spr/compst/v37y2022i2d10.1007_s00180-021-01155-7.html
   My bibliography  Save this article

Efficient particle smoothing for Bayesian inference in dynamic survival models

Author

Listed:
  • Parfait Munezero

    (Ericsson)

Abstract

This article proposes an efficient Bayesian inference for piecewise exponential hazard (PEH) models, which allow the effect of a covariate on the survival time to vary over time. The proposed inference methodology is based on a particle smoothing algorithm that depends on three particle filters. Efficient proposal (importance) distributions for the particle filters tailored to the nature of survival data and PEH models are developed using the Laplace approximation of the posterior distribution and linear Bayes theory. The algorithm is applied to both simulated and real data, and the results show that it is faster and more efficient than a state-of-the-art MCMC sampler, and scales well in high-dimensional and relatively large data.

Suggested Citation

  • Parfait Munezero, 2022. "Efficient particle smoothing for Bayesian inference in dynamic survival models," Computational Statistics, Springer, vol. 37(2), pages 975-994, April.
  • Handle: RePEc:spr:compst:v:37:y:2022:i:2:d:10.1007_s00180-021-01155-7
    DOI: 10.1007/s00180-021-01155-7
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s00180-021-01155-7
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s00180-021-01155-7?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Geweke, John, 1989. "Bayesian Inference in Econometric Models Using Monte Carlo Integration," Econometrica, Econometric Society, vol. 57(6), pages 1317-1339, November.
    2. Villani, Mattias & Kohn, Robert & Nott, David J., 2012. "Generalized smooth finite mixtures," Journal of Econometrics, Elsevier, vol. 171(2), pages 121-133.
    3. K. Hemming & J. E. H. Shaw, 2002. "A parametric dynamic survival model applied to breast cancer survival times," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 51(4), pages 421-435, October.
    4. Di Crescenzo, Antonio & Longobardi, Maria, 2004. "A measure of discrimination between past lifetime distributions," Statistics & Probability Letters, Elsevier, vol. 67(2), pages 173-182, April.
    5. Mark Briers & Arnaud Doucet & Simon Maskell, 2010. "Smoothing algorithms for state–space models," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 62(1), pages 61-89, February.
    6. Paul Fearnhead & David Wyncoll & Jonathan Tawn, 2010. "A sequential smoothing algorithm with linear computational cost," Biometrika, Biometrika Trust, vol. 97(2), pages 447-464.
    7. K. Burke & G. MacKenzie, 2017. "Multi-parameter regression survival modeling: An alternative to proportional hazards," Biometrics, The International Biometric Society, vol. 73(2), pages 678-686, June.
    8. Fahrmeir, Ludwig & Kneib, Thomas, 2011. "Bayesian Smoothing and Regression for Longitudinal, Spatial and Event History Data," OUP Catalogue, Oxford University Press, number 9780199533022.
    9. Dani Gamerman, 1991. "Dynamic Bayesian Models for Survival Data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 40(1), pages 63-79, March.
    10. Sourish Das & Dipak K. Dey, 2013. "On Dynamic Generalized Linear Models with Applications," Methodology and Computing in Applied Probability, Springer, vol. 15(2), pages 407-421, June.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. António A. F. Santos, 2015. "On the Forecasting of Financial Volatility Using Ultra-High Frequency Data," GEMF Working Papers 2015-17, GEMF, Faculty of Economics, University of Coimbra.
    2. Cizek, P. & Lei, J. & Ligthart, J.E., 2012. "The Determinants of VAT Introduction : A Spatial Duration Analysis," Other publications TiSEM 835efbcb-4537-4dab-aaa3-c, Tilburg University, School of Economics and Management.
    3. Persing, Adam & Jasra, Ajay, 2013. "Likelihood computation for hidden Markov models via generalized two-filter smoothing," Statistics & Probability Letters, Elsevier, vol. 83(5), pages 1433-1442.
    4. Scharth, Marcel & Kohn, Robert, 2016. "Particle efficient importance sampling," Journal of Econometrics, Elsevier, vol. 190(1), pages 133-147.
    5. Genshiro Kitagawa, 2014. "Computational aspects of sequential Monte Carlo filter and smoother," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 66(3), pages 443-471, June.
    6. Pavel Čížek & Jinghua Lei & Jenny E. Ligthart, 2017. "Do Neighbours Influence Value-Added-Tax Introduction? A Spatial Duration Analysis," Oxford Bulletin of Economics and Statistics, Department of Economics, University of Oxford, vol. 79(1), pages 25-54, February.
    7. Gregor Zens, 2018. "Bayesian shrinkage in mixture of experts models: Identifying robust determinants of class membership," Papers 1809.04853, arXiv.org, revised Jan 2019.
    8. Godolphin, E.J. & Triantafyllopoulos, Kostas, 2006. "Decomposition of time series models in state-space form," Computational Statistics & Data Analysis, Elsevier, vol. 50(9), pages 2232-2246, May.
    9. Gregor Zens, 2019. "Bayesian shrinkage in mixture-of-experts models: identifying robust determinants of class membership," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 13(4), pages 1019-1051, December.
    10. repec:wyi:journl:002173 is not listed on IDEAS
    11. Kostas Triantafyllopoulos, 2009. "Inference of Dynamic Generalized Linear Models: On‐Line Computation and Appraisal," International Statistical Review, International Statistical Institute, vol. 77(3), pages 430-450, December.
    12. Koop, Gary & Ley, Eduardo & Osiewalski, Jacek & Steel, Mark F. J., 1997. "Bayesian analysis of long memory and persistence using ARFIMA models," Journal of Econometrics, Elsevier, vol. 76(1-2), pages 149-169.
    13. Fernandez-Cornejo, Jorge & Wechsler, Seth James, 2012. "Fifteen Years Later: Examining the Adoption of Bt Corn Varieties by U.S. Farmers," 2012 Annual Meeting, August 12-14, 2012, Seattle, Washington 124257, Agricultural and Applied Economics Association.
    14. David Hémous & Morten Olsen, 2022. "The Rise of the Machines: Automation, Horizontal Innovation, and Income Inequality," American Economic Journal: Macroeconomics, American Economic Association, vol. 14(1), pages 179-223, January.
    15. Hajargasht, Gholamreza & Rao, D.S. Prasada, 2019. "Multilateral index number systems for international price comparisons: Properties, existence and uniqueness," Journal of Mathematical Economics, Elsevier, vol. 83(C), pages 36-47.
    16. Cranfield, John A.L. & Preckel, Paul V. & Liu, Songquan, 1997. "Approximating Bayesian Posteriors using Multivariate Gaussian Quadrature," 1997 Annual Meeting, July 13-16, 1997, Reno\ Sparks, Nevada 35791, Western Agricultural Economics Association.
    17. N. Unnikrishnan Nair & S. M. Sunoj & Rajesh G., 2023. "Relation between Relative Hazard Rates and Residual Divergence with some Applications to Reliability Analysis," Sankhya A: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 85(1), pages 784-802, February.
    18. Troske, Kenneth R. & Voicu, Alexandru, 2010. "Joint estimation of sequential labor force participation and fertility decisions using Markov chain Monte Carlo techniques," Labour Economics, Elsevier, vol. 17(1), pages 150-169, January.
    19. Ardia, David & Hoogerheide, Lennart F., 2010. "Efficient Bayesian estimation and combination of GARCH-type models," MPRA Paper 22919, University Library of Munich, Germany.
    20. Gorynin, Ivan & Derrode, Stéphane & Monfrini, Emmanuel & Pieczynski, Wojciech, 2017. "Fast smoothing in switching approximations of non-linear and non-Gaussian models," Computational Statistics & Data Analysis, Elsevier, vol. 114(C), pages 38-46.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:compst:v:37:y:2022:i:2:d:10.1007_s00180-021-01155-7. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.