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IA-Lab: A MATLAB framework for efficient microscopy image analysis development, applied to quantifying intracellular transport of internalized peptide-drug conjugate

Author

Listed:
  • Adam M Corrigan
  • Johan Karlsson
  • Jan Wildenhain
  • Laurent Knerr
  • Maria Ölwegård-Halvarsson
  • Maria Karlsson
  • Svenja Lünse
  • Yinhai Wang

Abstract

This work presents a MATLAB-based software package for high-throughput microscopy image analysis development, making such development more accessible for a large user community. The toolbox provides a GUI and a number of analysis workflows, and can serve as a general framework designed to allow for easy extension. For a new application, only a minor part of the object-oriented code needs to be replaced by new components, making development efficient. This makes it possible to quickly develop solutions for analysis not available in existing tools. We show its use in making a tool for quantifying intracellular transport of internalized peptide-drug conjugates.The code is freely available as open source on GitHub (https://github.com/amcorrigan/ia-lab)

Suggested Citation

  • Adam M Corrigan & Johan Karlsson & Jan Wildenhain & Laurent Knerr & Maria Ölwegård-Halvarsson & Maria Karlsson & Svenja Lünse & Yinhai Wang, 2019. "IA-Lab: A MATLAB framework for efficient microscopy image analysis development, applied to quantifying intracellular transport of internalized peptide-drug conjugate," PLOS ONE, Public Library of Science, vol. 14(8), pages 1-11, August.
    • Handle: RePEc:plo:pone00:0220627
    DOI: 10.1371/journal.pone.0220627
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