IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0208082.html
   My bibliography  Save this article

Bayesian hierarchical vector autoregressive models for patient-level predictive modeling

Author

Listed:
  • Feihan Lu
  • Yao Zheng
  • Harrington Cleveland
  • Chris Burton
  • David Madigan

Abstract

Predicting health outcomes from longitudinal health histories is of central importance to healthcare. Observational healthcare databases such as patient diary databases provide a rich resource for patient-level predictive modeling. In this paper, we propose a Bayesian hierarchical vector autoregressive (VAR) model to predict medical and psychological conditions using multivariate time series data. Compared to the existing patient-specific predictive VAR models, our model demonstrated higher accuracy in predicting future observations in terms of both point and interval estimates due to the pooling effect of the hierarchical model specification. In addition, by adopting an elastic-net prior, our model offers greater interpretability about the associations between variables of interest on both the population level and the patient level, as well as between-patient heterogeneity. We apply the model to two examples: 1) predicting substance use craving, negative affect and tobacco use among college students, and 2) predicting functional somatic symptoms and psychological discomforts.

Suggested Citation

  • Feihan Lu & Yao Zheng & Harrington Cleveland & Chris Burton & David Madigan, 2018. "Bayesian hierarchical vector autoregressive models for patient-level predictive modeling," PLOS ONE, Public Library of Science, vol. 13(12), pages 1-27, December.
  • Handle: RePEc:plo:pone00:0208082
    DOI: 10.1371/journal.pone.0208082
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0208082
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0208082&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0208082?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Stephen F Weng & Jenna Reps & Joe Kai & Jonathan M Garibaldi & Nadeem Qureshi, 2017. "Can machine-learning improve cardiovascular risk prediction using routine clinical data?," PLOS ONE, Public Library of Science, vol. 12(4), pages 1-14, April.
    2. Koop, Gary & Korobilis, Dimitris, 2010. "Bayesian Multivariate Time Series Methods for Empirical Macroeconomics," Foundations and Trends(R) in Econometrics, now publishers, vol. 3(4), pages 267-358, July.
    3. Park, Trevor & Casella, George, 2008. "The Bayesian Lasso," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 681-686, June.
    4. Gregor Stiglic & Petra Povalej Brzan & Nino Fijacko & Fei Wang & Boris Delibasic & Alexandros Kalousis & Zoran Obradovic, 2015. "Comprehensible Predictive Modeling Using Regularized Logistic Regression and Comorbidity Based Features," PLOS ONE, Public Library of Science, vol. 10(12), pages 1-11, December.
    5. Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
    6. Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Billio, Monica & Casarin, Roberto & Rossini, Luca, 2019. "Bayesian nonparametric sparse VAR models," Journal of Econometrics, Elsevier, vol. 212(1), pages 97-115.
    2. Monica Billio & Roberto Casarin & Luca Rossini, 2016. "Bayesian nonparametric sparse seemingly unrelated regression model (SUR)," Working Papers 2016:20, Department of Economics, University of Venice "Ca' Foscari".
    3. Philip D. Waggoner & Alec Macmillen, 2022. "Pursuing open-source development of predictive algorithms: the case of criminal sentencing algorithms," Journal of Computational Social Science, Springer, vol. 5(1), pages 89-109, May.
    4. Gilles Celeux & Mohammed El Anbari & Jean-Michel Marin & Christian P. Robert, 2010. "Regularization in Regression : Comparing Bayesian and Frequentist Methods in a Poorly Informative Situation," Working Papers 2010-43, Center for Research in Economics and Statistics.
    5. Shutes, Karl & Adcock, Chris, 2013. "Regularized Extended Skew-Normal Regression," MPRA Paper 58445, University Library of Munich, Germany, revised 09 Sep 2014.
    6. Korobilis, Dimitris, 2013. "Hierarchical shrinkage priors for dynamic regressions with many predictors," International Journal of Forecasting, Elsevier, vol. 29(1), pages 43-59.
    7. Shinya Suzuki & Takeshi Yamashita & Tsuyoshi Sakama & Takuto Arita & Naoharu Yagi & Takayuki Otsuka & Hiroaki Semba & Hiroto Kano & Shunsuke Matsuno & Yuko Kato & Tokuhisa Uejima & Yuji Oikawa & Minor, 2019. "Comparison of risk models for mortality and cardiovascular events between machine learning and conventional logistic regression analysis," PLOS ONE, Public Library of Science, vol. 14(9), pages 1-14, September.
    8. Yu-Zhu Tian & Man-Lai Tang & Wai-Sum Chan & Mao-Zai Tian, 2021. "Bayesian bridge-randomized penalized quantile regression for ordinal longitudinal data, with application to firm’s bond ratings," Computational Statistics, Springer, vol. 36(2), pages 1289-1319, June.
    9. Manisha Sanjay Sirsat & Paula Rodrigues Oblessuc & Ricardo S. Ramiro, 2022. "Genomic Prediction of Wheat Grain Yield Using Machine Learning," Agriculture, MDPI, vol. 12(9), pages 1-12, September.
    10. Ricardo P. Masini & Marcelo C. Medeiros & Eduardo F. Mendes, 2023. "Machine learning advances for time series forecasting," Journal of Economic Surveys, Wiley Blackwell, vol. 37(1), pages 76-111, February.
    11. Yagli, Gokhan Mert & Yang, Dazhi & Srinivasan, Dipti, 2019. "Automatic hourly solar forecasting using machine learning models," Renewable and Sustainable Energy Reviews, Elsevier, vol. 105(C), pages 487-498.
    12. Philip Kostov & Thankom Arun & Samuel Annim, 2014. "Financial Services to the Unbanked: the case of the Mzansi intervention in South Africa," Contemporary Economics, University of Economics and Human Sciences in Warsaw., vol. 8(2), June.
    13. Ruggieri, Eric & Lawrence, Charles E., 2012. "On efficient calculations for Bayesian variable selection," Computational Statistics & Data Analysis, Elsevier, vol. 56(6), pages 1319-1332.
    14. Olivier Collignon & Jeongseop Han & Hyungmi An & Seungyoung Oh & Youngjo Lee, 2018. "Comparison of the modified unbounded penalty and the LASSO to select predictive genes of response to chemotherapy in breast cancer," PLOS ONE, Public Library of Science, vol. 13(10), pages 1-15, October.
    15. Mogliani, Matteo & Simoni, Anna, 2021. "Bayesian MIDAS penalized regressions: Estimation, selection, and prediction," Journal of Econometrics, Elsevier, vol. 222(1), pages 833-860.
    16. Gilles Charmet & Louis-Gautier Tran & Jérôme Auzanneau & Renaud Rincent & Sophie Bouchet, 2020. "BWGS: A R package for genomic selection and its application to a wheat breeding programme," PLOS ONE, Public Library of Science, vol. 15(4), pages 1-20, April.
    17. Young Joo Yoon & Cheolwoo Park & Erik Hofmeister & Sangwook Kang, 2012. "Group variable selection in cardiopulmonary cerebral resuscitation data for veterinary patients," Journal of Applied Statistics, Taylor & Francis Journals, vol. 39(7), pages 1605-1621, January.
    18. Scutari Marco & Mackay Ian & Balding David, 2013. "Improving the efficiency of genomic selection," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 12(4), pages 517-527, August.
    19. Posch, Konstantin & Arbeiter, Maximilian & Pilz, Juergen, 2020. "A novel Bayesian approach for variable selection in linear regression models," Computational Statistics & Data Analysis, Elsevier, vol. 144(C).
    20. Bai, Ray & Ghosh, Malay, 2018. "High-dimensional multivariate posterior consistency under global–local shrinkage priors," Journal of Multivariate Analysis, Elsevier, vol. 167(C), pages 157-170.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0208082. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.