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Assessing the accuracy of predictive models for numerical data: Not r nor r2, why not? Then what?

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  • Jin Li

Abstract

Assessing the accuracy of predictive models is critical because predictive models have been increasingly used across various disciplines and predictive accuracy determines the quality of resultant predictions. Pearson product-moment correlation coefficient (r) and the coefficient of determination (r2) are among the most widely used measures for assessing predictive models for numerical data, although they are argued to be biased, insufficient and misleading. In this study, geometrical graphs were used to illustrate what were used in the calculation of r and r2 and simulations were used to demonstrate the behaviour of r and r2 and to compare three accuracy measures under various scenarios. Relevant confusions about r and r2, has been clarified. The calculation of r and r2 is not based on the differences between the predicted and observed values. The existing error measures suffer various limitations and are unable to tell the accuracy. Variance explained by predictive models based on cross-validation (VEcv) is free of these limitations and is a reliable accuracy measure. Legates and McCabe’s efficiency (E1) is also an alternative accuracy measure. The r and r2 do not measure the accuracy and are incorrect accuracy measures. The existing error measures suffer limitations. VEcv and E1 are recommended for assessing the accuracy. The applications of these accuracy measures would encourage accuracy-improved predictive models to be developed to generate predictions for evidence-informed decision-making.

Suggested Citation

  • Jin Li, 2017. "Assessing the accuracy of predictive models for numerical data: Not r nor r2, why not? Then what?," PLOS ONE, Public Library of Science, vol. 12(8), pages 1-16, August.
  • Handle: RePEc:plo:pone00:0183250
    DOI: 10.1371/journal.pone.0183250
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    2. Fort, Hugo, 2018. "On predicting species yields in multispecies communities: Quantifying the accuracy of the linear Lotka-Volterra generalized model," Ecological Modelling, Elsevier, vol. 387(C), pages 154-162.
    3. Fort, Hugo, 2020. "Making quantitative predictions on the yield of a species immersed in a multispecies community: The focal species method," Ecological Modelling, Elsevier, vol. 430(C).
    4. Siwei Li & Jingjing An & Yaqiu Li & Xiagu Zhu & Dongdong Zhao & Lixian Wang & Yonghui Sun & Yuanzhao Yang & Changhao Bi & Xueli Zhang & Meng Wang, 2022. "Automated high-throughput genome editing platform with an AI learning in situ prediction model," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    5. Rufino, Marta M. & Albouy, Camille & Brind'Amour, Anik, 2021. "Which spatial interpolators I should use? A case study applying to marine species," Ecological Modelling, Elsevier, vol. 449(C).
    6. Nithin Isaac & Akshay K. Saha, 2024. "Forecasting Hydrogen Vehicle Refuelling for Sustainable Transportation: A Light Gradient-Boosting Machine Model," Sustainability, MDPI, vol. 16(10), pages 1-24, May.
    7. Ahmad Al-Buenain & Mohamed Haouari & Jithu Reji Jacob, 2024. "Predicting Fan Attendance at Mega Sports Events—A Machine Learning Approach: A Case Study of the FIFA World Cup Qatar 2022," Mathematics, MDPI, vol. 12(6), pages 1-25, March.
    8. Ritabrata Roy & Mrinmoy Majumder, 2022. "Assessment of water quality trends in Deepor Beel, Assam, India," Environment, Development and Sustainability: A Multidisciplinary Approach to the Theory and Practice of Sustainable Development, Springer, vol. 24(12), pages 14327-14347, December.
    9. Daniel S. Maynard & Lalasia Bialic-Murphy & Constantin M. Zohner & Colin Averill & Johan Hoogen & Haozhi Ma & Lidong Mo & Gabriel Reuben Smith & Alicia T. R. Acosta & Isabelle Aubin & Erika Berenguer , 2022. "Global relationships in tree functional traits," Nature Communications, Nature, vol. 13(1), pages 1-12, December.

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