IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0054115.html
   My bibliography  Save this article

Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population

Author

Listed:
  • Dong Shi
  • Tomoyo Funayama
  • Yukihiko Mashima
  • Yoshimasa Takano
  • Ai Shimizu
  • Kotaro Yamamoto
  • MinGe Mengkegale
  • Akiko Miyazawa
  • Noriko Yasuda
  • Takeo Fukuchi
  • Haruki Abe
  • Hidenao Ideta
  • Kohji Nishida
  • Toru Nakazawa
  • Julia E Richards
  • Nobuo Fuse

Abstract

Although family studies and genome-wide association studies have shown that genetic factors play a role in glaucoma, it has been difficult to identify the specific genetic variants involved. We tested 669 single nucleotide polymorphisms (SNPs) from the region of chromosome 2 that includes the GLC1B glaucoma locus for association with primary open-angle glaucoma (POAG) and normal tension glaucoma (NTG) in the Japanese population. We performed a two-stage case-control study. The first cohort consisted of 123 POAG cases, 121 NTG cases and 120 controls: the second cohort consisted of 187 POAG cases, 286 NTG cases, and 271 controls. Out of six SNPs showing significant association with POAG in the first round screening, seven SNPs were tested in the second round. Rs678350 in the HK2 gene coding sequence showed significant allelic (p = 0.0027 in Stage Two, 2.7XE-4 in meta-analysis) association with POAG, and significant allelic (p = 4.7XE-4 in Stage Two, 1.0XE-5 in meta-analysis) association with NTG. Although alleles in the TMEM182 gene did not show significant association with glaucoma in the second round, subjects with the A/A allele in TMEM182 rs869833 showed worse visual field mean deviation (p = 0.01). Even though rs2033008 in the NCK2 gene coding sequence did not show significant association in the first round, it had previously shown association with NTG so it was tested for association with NTG in round 2 (p = 0.0053 in Stage Two). Immunohistochemistry showed that both HK2 and NCK2 are expressed in the retinal ganglion cell layer. Once multi-testing was taken into account, only HK2 showed significant association with POAG and NTG in Stage Two. Our data also support previous reports of NCK2 association with NTG, and raise questions about what role TMEM182 might play in phenotypic variability. Our data suggest that HK2 may play an important role in NTG in the Japanese population.

Suggested Citation

  • Dong Shi & Tomoyo Funayama & Yukihiko Mashima & Yoshimasa Takano & Ai Shimizu & Kotaro Yamamoto & MinGe Mengkegale & Akiko Miyazawa & Noriko Yasuda & Takeo Fukuchi & Haruki Abe & Hidenao Ideta & Kohji, 2013. "Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population," PLOS ONE, Public Library of Science, vol. 8(1), pages 1-11, January.
  • Handle: RePEc:plo:pone00:0054115
    DOI: 10.1371/journal.pone.0054115
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0054115
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0054115&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0054115?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0054115. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no bibliographic references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.