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Source Partitioning Using Stable Isotopes: Coping with Too Much Variation

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  • Andrew C Parnell
  • Richard Inger
  • Stuart Bearhop
  • Andrew L Jackson

Abstract

Background: Stable isotope analysis is increasingly being utilised across broad areas of ecology and biology. Key to much of this work is the use of mixing models to estimate the proportion of sources contributing to a mixture such as in diet estimation. Methodology: By accurately reflecting natural variation and uncertainty to generate robust probability estimates of source proportions, the application of Bayesian methods to stable isotope mixing models promises to enable researchers to address an array of new questions, and approach current questions with greater insight and honesty. Conclusions: We outline a framework that builds on recently published Bayesian isotopic mixing models and present a new open source R package, SIAR. The formulation in R will allow for continued and rapid development of this core model into an all-encompassing single analysis suite for stable isotope research.

Suggested Citation

  • Andrew C Parnell & Richard Inger & Stuart Bearhop & Andrew L Jackson, 2010. "Source Partitioning Using Stable Isotopes: Coping with Too Much Variation," PLOS ONE, Public Library of Science, vol. 5(3), pages 1-5, March.
  • Handle: RePEc:plo:pone00:0009672
    DOI: 10.1371/journal.pone.0009672
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    1. Kou, Xinyue & Ding, Junjun & Li, Yuzhong & Li, Qiaozhen & Mao, Lili & Xu, Chunying & Zheng, Qian & Zhuang, Shan, 2021. "Tracing nitrate sources in the groundwater of an intensive agricultural region," Agricultural Water Management, Elsevier, vol. 250(C).
    2. Alex S J Wyatt & Anya M Waite & Stuart Humphries, 2010. "Variability in Isotope Discrimination Factors in Coral Reef Fishes: Implications for Diet and Food Web Reconstruction," PLOS ONE, Public Library of Science, vol. 5(10), pages 1-10, October.
    3. Gao, Jingbo & Li, Zhiqin & Chen, Zhujun & Zhou, Yang & Liu, Weiguo & Wang, Lei & Zhou, Jianbin, 2021. "Deterioration of groundwater quality along an increasing intensive land use pattern in a small catchment," Agricultural Water Management, Elsevier, vol. 253(C).
    4. Xie, Zheyu & Zhang, Yujing & Zhang, Zhenyu & Huang, Jinliang, 2023. "Nitrate removal mechanism in riparian groundwater in an intensified agricultural catchment," Agricultural Water Management, Elsevier, vol. 280(C).
    5. T. M. Morganti & B. M. Slaby & A. Kluijver & K. Busch & U. Hentschel & J. J. Middelburg & H. Grotheer & G. Mollenhauer & J. Dannheim & H. T. Rapp & A. Purser & A. Boetius, 2022. "Giant sponge grounds of Central Arctic seamounts are associated with extinct seep life," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    6. Wenchen SONG & Xiaojuan TONG & Jinsong ZHANG & Ping MENG & Jun LI, 2017. "Autotrophic and heterotrophic components of soil respiration caused by rhizosphere priming effects in a plantation," Plant, Soil and Environment, Czech Academy of Agricultural Sciences, vol. 63(7), pages 295-299.
    7. Pacella, Stephen R. & Lebreton, Benoit & Richard, Pierre & Phillips, Donald & DeWitt, Theodore H. & Niquil, Nathalie, 2013. "Incorporation of diet information derived from Bayesian stable isotope mixing models into mass-balanced marine ecosystem models: A case study from the Marennes-Oléron Estuary, France," Ecological Modelling, Elsevier, vol. 267(C), pages 127-137.
    8. Hu, Liangliang & Guo, Liang & Zhao, Lufeng & Shi, Xiaoyu & Ren, Weizheng & Zhang, Jian & Tang, Jianjun & Chen, Xin, 2020. "Productivity and the complementary use of nitrogen in the coupled rice-crab system," Agricultural Systems, Elsevier, vol. 178(C).
    9. Wang, Zhong-Jun & Yue, Fu-Jun & Wang, Yu-Chun & Qin, Cai-Qing & Ding, Hu & Xue, Li-Li & Li, Si-Liang, 2022. "The effect of heavy rainfall events on nitrogen patterns in agricultural surface and underground streams and the implications for karst water quality protection," Agricultural Water Management, Elsevier, vol. 266(C).
    10. Changming Cao & Na Li & Weifeng Yue & Lijun Wu & Xinyi Cao & Yuanzheng Zhai, 2022. "Analysis of the Interaction between Lake and Groundwater Based on Water–Salt Balance Method and Stable Isotopic Characteristics," IJERPH, MDPI, vol. 19(19), pages 1-16, September.
    11. Wanrui Zhu & Wenhua Li & Peili Shi & Jiansheng Cao & Ning Zong & Shoubao Geng, 2021. "Intensified Interspecific Competition for Water after Afforestation with Robinia pseudoacacia into a Native Shrubland in the Taihang Mountains, Northern China," Sustainability, MDPI, vol. 13(2), pages 1-16, January.
    12. Hao, Zhuo & Shi, Yuanyuan & Zhan, Xiaoying & Yu, Bowei & Fan, Qing & Zhu, Jie & Liu, Lianhua & Zhang, Qingwen & Zhao, Guangxiang, 2024. "Quantifying and assessing nitrogen sources and transport in a megacity water supply watershed: Insights for effective non-point source pollution management with mixSIAR and SWAT models," Agricultural Water Management, Elsevier, vol. 291(C).
    13. Liu, Yingbo & Yuan, Yusen & Zhang, Liang & Du, Taisheng, 2024. "Exploring the differences of moisture traceability methods based on MixSIAR model under different nitrogen applications of wheat in the Arid Region of Northwest China," Agricultural Water Management, Elsevier, vol. 294(C).
    14. Zhou, Yanqing & Gao, Xiaodong & Wang, Jiaxin & Robinson, Brett H. & Zhao, Xining, 2021. "Water-use patterns of Chinese wolfberry (Lycium barbarum L.) on the Tibetan Plateau," Agricultural Water Management, Elsevier, vol. 255(C).

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