Inferring Binding Energies from Selected Binding Sites
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Abstract
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DOI: 10.1371/journal.pcbi.1000590
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References listed on IDEAS
- Dana S F Homsi & Vineet Gupta & Gary D Stormo, 2009. "Modeling the Quantitative Specificity of DNA-Binding Proteins from Example Binding Sites," PLOS ONE, Public Library of Science, vol. 4(8), pages 1-9, August.
- Eilon Sharon & Shai Lubliner & Eran Segal, 2008. "A Feature-Based Approach to Modeling Protein–DNA Interactions," PLOS Computational Biology, Public Library of Science, vol. 4(8), pages 1-17, August.
- Mei-Ling Ting Lee & Martha L. Bulyk & G. A. Whitmore & George M. Church, 2002. "A Statistical Model for Investigating Binding Probabilities of DNA Nucleotide Sequences Using Microarrays," Biometrics, The International Biometric Society, vol. 58(4), pages 981-988, December.
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Cited by:
- Claudia Coronnello & Ryan Hartmaier & Arshi Arora & Luai Huleihel & Kusum V Pandit & Abha S Bais & Michael Butterworth & Naftali Kaminski & Gary D Stormo & Steffi Oesterreich & Panayiotis V Benos, 2012. "Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density," PLOS Computational Biology, Public Library of Science, vol. 8(12), pages 1-13, December.
- Vishaka Datta & Sridhar Hannenhalli & Rahul Siddharthan, 2019. "ChIPulate: A comprehensive ChIP-seq simulation pipeline," PLOS Computational Biology, Public Library of Science, vol. 15(3), pages 1-32, March.
- Shuxiang Ruan & Gary D Stormo, 2017. "Inherent limitations of probabilistic models for protein-DNA binding specificity," PLOS Computational Biology, Public Library of Science, vol. 13(7), pages 1-15, July.
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- Shuxiang Ruan & Gary D Stormo, 2017. "Inherent limitations of probabilistic models for protein-DNA binding specificity," PLOS Computational Biology, Public Library of Science, vol. 13(7), pages 1-15, July.
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