A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
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Abstract
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DOI: 10.1371/journal.pcbi.1000069
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References listed on IDEAS
- Eric P Nawrocki & Sean R Eddy, 2007. "Query-Dependent Banding (QDB) for Faster RNA Similarity Searches," PLOS Computational Biology, Public Library of Science, vol. 3(3), pages 1-15, March.
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Cited by:
- Alejandro Ochoa & John D Storey & Manuel Llinás & Mona Singh, 2015. "Beyond the E-Value: Stratified Statistics for Protein Domain Prediction," PLOS Computational Biology, Public Library of Science, vol. 11(11), pages 1-21, November.
- Sean R Eddy, 2011. "Accelerated Profile HMM Searches," PLOS Computational Biology, Public Library of Science, vol. 7(10), pages 1-16, October.
- Friedrich Torben & Koetschan Christian & Müller Tobias, 2010. "Optimisation of HMM Topologies Enhances DNA and Protein Sequence Modelling," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-27, January.
- Angelina Beavogui & Auriane Lacroix & Nicolas Wiart & Julie Poulain & Tom O. Delmont & Lucas Paoli & Patrick Wincker & Pedro H. Oliveira, 2024. "The defensome of complex bacterial communities," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Wing-Cheong Wong & Sebastian Maurer-Stroh & Frank Eisenhaber, 2010. "More Than 1,001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology," PLOS Computational Biology, Public Library of Science, vol. 6(7), pages 1-19, July.
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