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Variance bounding and geometric ergodicity of Markov chain Monte Carlo kernels for approximate Bayesian computation

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  • Anthony Lee
  • Krzysztof Łatuszyński

Abstract

Approximate Bayesian computation has emerged as a standard computational tool when dealing with intractable likelihood functions in Bayesian inference. We show that many common Markov chain Monte Carlo kernels used to facilitate inference in this setting can fail to be variance bounding and hence geometrically ergodic, which can have consequences for the reliability of estimates in practice. This phenomenon is typically independent of the choice of tolerance in the approximation. We prove that a recently introduced Markov kernel can inherit the properties of variance bounding and geometric ergodicity from its intractable Metropolis–Hastings counterpart, under reasonably weak conditions. We show that the computational cost of this alternative kernel is bounded whenever the prior is proper, and present indicative results for an example where spectral gaps and asymptotic variances can be computed, as well as an example involving inference for a partially and discretely observed, time-homogeneous, pure jump Markov process. We also supply two general theorems, one providing a simple sufficient condition for lack of variance bounding for reversible kernels and the other providing a positive result concerning inheritance of variance bounding and geometric ergodicity for mixtures of reversible kernels.

Suggested Citation

  • Anthony Lee & Krzysztof Łatuszyński, 2014. "Variance bounding and geometric ergodicity of Markov chain Monte Carlo kernels for approximate Bayesian computation," Biometrika, Biometrika Trust, vol. 101(3), pages 655-671.
  • Handle: RePEc:oup:biomet:v:101:y:2014:i:3:p:655-671.
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    File URL: http://hdl.handle.net/10.1093/biomet/asu027
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    Citations

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    Cited by:

    1. Espen Bernton & Pierre E. Jacob & Mathieu Gerber & Christian P. Robert, 2019. "Approximate Bayesian computation with the Wasserstein distance," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 81(2), pages 235-269, April.
    2. Chris Sherlock & Anthony Lee, 2022. "Variance Bounding of Delayed-Acceptance Kernels," Methodology and Computing in Applied Probability, Springer, vol. 24(3), pages 2237-2260, September.
    3. Fredrik Lindsten & Randal Douc & Eric Moulines, 2015. "Uniform Ergodicity of the Particle Gibbs Sampler," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 42(3), pages 775-797, September.
    4. Alexander Buchholz & Nicolas CHOPIN, 2017. "Improving approximate Bayesian computation via quasi Monte Carlo," Working Papers 2017-37, Center for Research in Economics and Statistics.
    5. repec:bla:istatr:v:83:y:2015:i:3:p:405-435 is not listed on IDEAS
    6. Matti Vihola & Jouni Helske & Jordan Franks, 2020. "Importance sampling type estimators based on approximate marginal Markov chain Monte Carlo," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 47(4), pages 1339-1376, December.

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