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Chromatin remodelling drives immune cell–fibroblast communication in heart failure

Author

Listed:
  • Michael Alexanian

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes
    University of California, San Francisco)

  • Arun Padmanabhan

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes
    University of California, San Francisco
    Chan Zuckerberg Biohub San Francisco)

  • Tomohiro Nishino

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Joshua G. Travers

    (University of Colorado Anschutz Medical Campus)

  • Lin Ye

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Angelo Pelonero

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Clara Youngna Lee

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes
    University of California, San Francisco)

  • Nandhini Sadagopan

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes
    University of California, San Francisco)

  • Yu Huang

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Kirsten Auclair

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Ada Zhu

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Yuqian An

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Christina A. Ekstrand

    (University of California
    University of California)

  • Cassandra Martinez

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Barbara Gonzalez Teran

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Will R. Flanigan

    (Gladstone Institutes
    UC Berkeley-UCSF Joint Program in Bioengineering)

  • Charis Kee-Seon Kim

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Koya Lumbao-Conradson

    (University of Colorado Anschutz Medical Campus)

  • Zachary Gardner

    (University of Pennsylvania
    University of Pennsylvania
    University of Pennsylvania
    University of Pennsylvania)

  • Li Li

    (University of Pennsylvania
    University of Pennsylvania
    University of Pennsylvania
    University of Pennsylvania)

  • Mauro W. Costa

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes)

  • Rajan Jain

    (University of Pennsylvania
    University of Pennsylvania
    University of Pennsylvania
    University of Pennsylvania)

  • Israel Charo

    (Gladstone Institutes)

  • Alexis J. Combes

    (University of California
    University of California
    University of California)

  • Saptarsi M. Haldar

    (Gladstone Institutes
    University of California, San Francisco
    Cardiometabolic Disorders)

  • Katherine S. Pollard

    (Gladstone Institutes
    Chan Zuckerberg Biohub San Francisco
    University of California, San Francisco
    University of California, San Francisco)

  • Ronald J. Vagnozzi

    (University of Colorado Anschutz Medical Campus)

  • Timothy A. McKinsey

    (University of Colorado Anschutz Medical Campus)

  • Pawel F. Przytycki

    (Gladstone Institutes
    Boston University)

  • Deepak Srivastava

    (Gladstone Institutes
    Roddenberry Center for Stem Cell Biology at Gladstone Institutes
    University of California, San Francisco
    University of California, San Francisco)

Abstract

Chronic inflammation and tissue fibrosis are common responses that worsen organ function, yet the molecular mechanisms governing their cross-talk are poorly understood. In diseased organs, stress-induced gene expression changes fuel maladaptive cell state transitions1 and pathological interaction between cellular compartments. Although chronic fibroblast activation worsens dysfunction in the lungs, liver, kidneys and heart, and exacerbates many cancers2, the stress-sensing mechanisms initiating transcriptional activation of fibroblasts are poorly understood. Here we show that conditional deletion of the transcriptional co-activator Brd4 in infiltrating Cx3cr1+ macrophages ameliorates heart failure in mice and significantly reduces fibroblast activation. Analysis of single-cell chromatin accessibility and BRD4 occupancy in vivo in Cx3cr1+ cells identified a large enhancer proximal to interleukin-1β (IL-1β, encoded by Il1b), and a series of CRISPR-based deletions revealed the precise stress-dependent regulatory element that controls Il1b expression. Secreted IL-1β activated a fibroblast RELA-dependent (also known as p65) enhancer near the transcription factor MEOX1, resulting in a profibrotic response in human cardiac fibroblasts. In vivo, antibody-mediated IL-1β neutralization improved cardiac function and tissue fibrosis in heart failure. Systemic IL-1β inhibition or targeted Il1b deletion in Cx3cr1+ cells prevented stress-induced Meox1 expression and fibroblast activation. The elucidation of BRD4-dependent cross-talk between a specific immune cell subset and fibroblasts through IL-1β reveals how inflammation drives profibrotic cell states and supports strategies that modulate this process in heart disease and other chronic inflammatory disorders featuring tissue remodelling.

Suggested Citation

  • Michael Alexanian & Arun Padmanabhan & Tomohiro Nishino & Joshua G. Travers & Lin Ye & Angelo Pelonero & Clara Youngna Lee & Nandhini Sadagopan & Yu Huang & Kirsten Auclair & Ada Zhu & Yuqian An & Chr, 2024. "Chromatin remodelling drives immune cell–fibroblast communication in heart failure," Nature, Nature, vol. 635(8038), pages 434-443, November.
  • Handle: RePEc:nat:nature:v:635:y:2024:i:8038:d:10.1038_s41586-024-08085-6
    DOI: 10.1038/s41586-024-08085-6
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