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Naturally occurring T cell mutations enhance engineered T cell therapies

Author

Listed:
  • Julie Garcia

    (University of California, San Francisco
    Parker Institute for Cancer Immunotherapy
    Moonlight Bio)

  • Jay Daniels

    (University of California, San Francisco
    Northwestern University Feinberg School of Medicine
    Northwestern University Feinberg School of Medicine
    Moonlight Bio)

  • Yujin Lee

    (Northwestern University Feinberg School of Medicine
    Northwestern University Feinberg School of Medicine)

  • Iowis Zhu

    (University of California, San Francisco
    Parker Institute for Cancer Immunotherapy)

  • Kathleen Cheng

    (Northwestern University Feinberg School of Medicine
    Northwestern University Feinberg School of Medicine)

  • Qing Liu

    (Northwestern University Feinberg School of Medicine
    Northwestern University Feinberg School of Medicine)

  • Daniel Goodman

    (University of California, San Francisco
    Parker Institute for Cancer Immunotherapy)

  • Cassandra Burnett

    (University of California, San Francisco
    Parker Institute for Cancer Immunotherapy)

  • Calvin Law

    (Northwestern University Feinberg School of Medicine
    Northwestern University Feinberg School of Medicine)

  • Chloë Thienpont

    (University of California, San Francisco)

  • Josef Alavi

    (University of California, San Francisco)

  • Camillia Azimi

    (University of California, San Francisco
    Parker Institute for Cancer Immunotherapy)

  • Garrett Montgomery

    (University of California, San Francisco)

  • Kole T. Roybal

    (University of California, San Francisco
    Parker Institute for Cancer Immunotherapy
    Chan Zuckerberg Biohub
    University of California, San Francisco)

  • Jaehyuk Choi

    (Northwestern University Feinberg School of Medicine
    Northwestern University Feinberg School of Medicine
    Northwestern University
    Northwestern University Feinberg School of Medicine)

Abstract

Adoptive T cell therapies have produced exceptional responses in a subset of patients with cancer. However, therapeutic efficacy can be hindered by poor T cell persistence and function1. In human T cell cancers, evolution of the disease positively selects for mutations that improve fitness of T cells in challenging situations analogous to those faced by therapeutic T cells. Therefore, we reasoned that these mutations could be co-opted to improve T cell therapies. Here we systematically screened the effects of 71 mutations from T cell neoplasms on T cell signalling, cytokine production and in vivo persistence in tumours. We identify a gene fusion, CARD11–PIK3R3, found in a CD4+ cutaneous T cell lymphoma2, that augments CARD11–BCL10–MALT1 complex signalling and anti-tumour efficacy of therapeutic T cells in several immunotherapy-refractory models in an antigen-dependent manner. Underscoring its potential to be deployed safely, CARD11–PIK3R3-expressing cells were followed up to 418 days after T cell transfer in vivo without evidence of malignant transformation. Collectively, our results indicate that exploiting naturally occurring mutations represents a promising approach to explore the extremes of T cell biology and discover how solutions derived from evolution of malignant T cells can improve a broad range of T cell therapies.

Suggested Citation

  • Julie Garcia & Jay Daniels & Yujin Lee & Iowis Zhu & Kathleen Cheng & Qing Liu & Daniel Goodman & Cassandra Burnett & Calvin Law & Chloë Thienpont & Josef Alavi & Camillia Azimi & Garrett Montgomery &, 2024. "Naturally occurring T cell mutations enhance engineered T cell therapies," Nature, Nature, vol. 626(7999), pages 626-634, February.
  • Handle: RePEc:nat:nature:v:626:y:2024:i:7999:d:10.1038_s41586-024-07018-7
    DOI: 10.1038/s41586-024-07018-7
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