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Structure-based design of bitopic ligands for the µ-opioid receptor

Author

Listed:
  • Abdelfattah Faouzi

    (University of Health Sciences and Pharmacy and Washington University School of Medicine)

  • Haoqing Wang

    (Stanford University School of Medicine)

  • Saheem A. Zaidi

    (University of Southern California)

  • Jeffrey F. DiBerto

    (University of North Carolina School of Medicine)

  • Tao Che

    (University of Health Sciences and Pharmacy and Washington University School of Medicine
    University of North Carolina School of Medicine)

  • Qianhui Qu

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Michael J. Robertson

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Manish K. Madasu

    (University of Health Sciences and Pharmacy and Washington University School of Medicine)

  • Amal El Daibani

    (University of Health Sciences and Pharmacy and Washington University School of Medicine)

  • Balazs R. Varga

    (University of Health Sciences and Pharmacy and Washington University School of Medicine)

  • Tiffany Zhang

    (Memorial Sloan Kettering Cancer Center)

  • Claudia Ruiz

    (Scripps Research)

  • Shan Liu

    (Rutgers New Jersey Medical School)

  • Jin Xu

    (Rutgers New Jersey Medical School)

  • Kevin Appourchaux

    (University of Health Sciences and Pharmacy and Washington University School of Medicine)

  • Samuel T. Slocum

    (University of North Carolina School of Medicine)

  • Shainnel O. Eans

    (University of Florida)

  • Michael D. Cameron

    (Scripps Research)

  • Ream Al-Hasani

    (University of Health Sciences and Pharmacy and Washington University School of Medicine)

  • Ying Xian Pan

    (Memorial Sloan Kettering Cancer Center
    Rutgers New Jersey Medical School)

  • Bryan L. Roth

    (University of North Carolina School of Medicine)

  • Jay P. McLaughlin

    (University of Florida)

  • Georgios Skiniotis

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Vsevolod Katritch

    (University of Southern California)

  • Brian K. Kobilka

    (Stanford University School of Medicine)

  • Susruta Majumdar

    (University of Health Sciences and Pharmacy and Washington University School of Medicine)

Abstract

Mu-opioid receptor (µOR) agonists such as fentanyl have long been used for pain management, but are considered a major public health concern owing to their adverse side effects, including lethal overdose1. Here, in an effort to design safer therapeutic agents, we report an approach targeting a conserved sodium ion-binding site2 found in µOR3 and many other class A G-protein-coupled receptors with bitopic fentanyl derivatives that are functionalized via a linker with a positively charged guanidino group. Cryo-electron microscopy structures of the most potent bitopic ligands in complex with µOR highlight the key interactions between the guanidine of the ligands and the key Asp2.50 residue in the Na+ site. Two bitopics (C5 and C6 guano) maintain nanomolar potency and high efficacy at Gi subtypes and show strongly reduced arrestin recruitment—one (C6 guano) also shows the lowest Gz efficacy among the panel of µOR agonists, including partial and biased morphinan and fentanyl analogues. In mice, C6 guano displayed µOR-dependent antinociception with attenuated adverse effects, supporting the µOR sodium ion-binding site as a potential target for the design of safer analgesics. In general, our study suggests that bitopic ligands that engage the sodium ion-binding pocket in class A G-protein-coupled receptors can be designed to control their efficacy and functional selectivity profiles for Gi, Go and Gz subtypes and arrestins, thus modulating their in vivo pharmacology.

Suggested Citation

  • Abdelfattah Faouzi & Haoqing Wang & Saheem A. Zaidi & Jeffrey F. DiBerto & Tao Che & Qianhui Qu & Michael J. Robertson & Manish K. Madasu & Amal El Daibani & Balazs R. Varga & Tiffany Zhang & Claudia , 2023. "Structure-based design of bitopic ligands for the µ-opioid receptor," Nature, Nature, vol. 613(7945), pages 767-774, January.
  • Handle: RePEc:nat:nature:v:613:y:2023:i:7945:d:10.1038_s41586-022-05588-y
    DOI: 10.1038/s41586-022-05588-y
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    Cited by:

    1. Sandra Arroyo-Urea & Antonina L. Nazarova & Ángela Carrión-Antolí & Alessandro Bonifazi & Francisco O. Battiti & Jordy Homing Lam & Amy Hauck Newman & Vsevolod Katritch & Javier García-Nafría, 2024. "A bitopic agonist bound to the dopamine 3 receptor reveals a selectivity site," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    2. Lin Cheng & Zhuang Miao & Sicen Liu & Zhe Li & Hong Fu & Chanjuan Xu & Shilong Hu & Chang Zhao & Yuxuan Liu & Tiantian Zhao & Wencheng Liu & Heli Wang & Runduo Liu & Wei Yan & Xiangdong Tang & Jianfen, 2024. "Cryo-EM structure of small-molecule agonist bound delta opioid receptor-Gi complex enables discovery of biased compound," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    3. Václav Havel & Andrew C. Kruegel & Benjamin Bechand & Scot McIntosh & Leia Stallings & Alana Hodges & Madalee G. Wulf & Mel Nelson & Amanda Hunkele & Michael Ansonoff & John E. Pintar & Christopher Hw, 2024. "Oxa-Iboga alkaloids lack cardiac risk and disrupt opioid use in animal models," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
    4. Jun Yu & Amit Kumar & Xuefeng Zhang & Charlotte Martin & Kevin Van holsbeeck & Pierre Raia & Antoine Koehl & Toon Laeremans & Jan Steyaert & Aashish Manglik & Steven Ballet & Andreas Boland & Miriam S, 2024. "Structural basis of μ-opioid receptor targeting by a nanobody antagonist," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    5. Shivani Sachdev & Brendan A. Creemer & Thomas J. Gardella & Ross W. Cheloha, 2024. "Highly biased agonism for GPCR ligands via nanobody tethering," Nature Communications, Nature, vol. 15(1), pages 1-15, December.

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