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Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave

Author

Listed:
  • Jessica T. Davis

    (Northeastern University)

  • Matteo Chinazzi

    (Northeastern University)

  • Nicola Perra

    (Northeastern University
    University of Greenwich)

  • Kunpeng Mu

    (Northeastern University)

  • Ana Pastore y Piontti

    (Northeastern University)

  • Marco Ajelli

    (Indiana University School of Public Health)

  • Natalie E. Dean

    (Emory University)

  • Corrado Gioannini

    (ISI Foundation)

  • Maria Litvinova

    (Indiana University School of Public Health)

  • Stefano Merler

    (Bruno Kessler Foundation)

  • Luca Rossi

    (ISI Foundation)

  • Kaiyuan Sun

    (National Institutes of Health)

  • Xinyue Xiong

    (Northeastern University)

  • Ira M. Longini

    (University of Florida)

  • M. Elizabeth Halloran

    (Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center
    University of Washington)

  • Cécile Viboud

    (National Institutes of Health)

  • Alessandro Vespignani

    (Northeastern University)

Abstract

Considerable uncertainty surrounds the timeline of introductions and onsets of local transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) globally1–7. Although a limited number of SARS-CoV-2 introductions were reported in January and February 2020 (refs.8,9), the narrowness of the initial testing criteria, combined with a slow growth in testing capacity and porous travel screening10, left many countries vulnerable to unmitigated, cryptic transmission. Here we use a global metapopulation epidemic model to provide a mechanistic understanding of the early dispersal of infections and the temporal windows of the introduction of SARS-CoV-2 and onset of local transmission in Europe and the USA. We find that community transmission of SARS-CoV-2 was likely to have been present in several areas of Europe and the USA by January 2020, and estimate that by early March, only 1 to 4 in 100 SARS-CoV-2 infections were detected by surveillance systems. The modelling results highlight international travel as the key driver of the introduction of SARS-CoV-2, with possible introductions and transmission events as early as December 2019 to January 2020. We find a heterogeneous geographic distribution of cumulative infection attack rates by 4 July 2020, ranging from 0.78% to 15.2% across US states and 0.19% to 13.2% in European countries. Our approach complements phylogenetic analyses and other surveillance approaches and provides insights that can be used to design innovative, model-driven surveillance systems that guide enhanced testing and response strategies.

Suggested Citation

  • Jessica T. Davis & Matteo Chinazzi & Nicola Perra & Kunpeng Mu & Ana Pastore y Piontti & Marco Ajelli & Natalie E. Dean & Corrado Gioannini & Maria Litvinova & Stefano Merler & Luca Rossi & Kaiyuan Su, 2021. "Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave," Nature, Nature, vol. 600(7887), pages 127-132, December.
  • Handle: RePEc:nat:nature:v:600:y:2021:i:7887:d:10.1038_s41586-021-04130-w
    DOI: 10.1038/s41586-021-04130-w
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    Cited by:

    1. Meliksah Turker & Haluk O. Bingol, 2023. "Multi-layer network approach in modeling epidemics in an urban town," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 96(2), pages 1-13, February.

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