Progressive Cactus is a multiple-genome aligner for the thousand-genome era
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DOI: 10.1038/s41586-020-2871-y
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- Matthew I. M. Louder & Hannah Justen & Abigail A. Kimmitt & Koedi S. Lawley & Leslie M. Turner & J. David Dickman & Kira E. Delmore, 2024. "Gene regulation and speciation in a migratory divide between songbirds," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Botong Zhou & Ping Hu & Guichun Liu & Zhou Chang & Zhiwei Dong & Zihe Li & Yuan Yin & Zunzhe Tian & Ge Han & Wen Wang & Xueyan Li, 2024. "Evolutionary patterns and functional effects of 3D chromatin structures in butterflies with extensive genome rearrangements," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Cristian Groza & Carl Schwendinger-Schreck & Warren A. Cheung & Emily G. Farrow & Isabelle Thiffault & Juniper Lake & William B. Rizzo & Gilad Evrony & Tom Curran & Guillaume Bourque & Tomi Pastinen, 2024. "Pangenome graphs improve the analysis of structural variants in rare genetic diseases," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Guangji Chen & Dan Yu & Yu Yang & Xiang Li & Xiaojing Wang & Danyang Sun & Yanlin Lu & Rongqin Ke & Guojie Zhang & Jie Cui & Shaohong Feng, 2024. "Adaptive expansion of ERVK solo-LTRs is associated with Passeriformes speciation events," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Francesco Cicconardi & Edoardo Milanetti & Erika C. Pinheiro de Castro & Anyi Mazo-Vargas & Steven M. Van Belleghem & Angelo Alberto Ruggieri & Pasi Rastas & Joseph Hanly & Elizabeth Evans & Chris D. , 2023. "Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies," Nature Communications, Nature, vol. 14(1), pages 1-24, December.
- Junhui Peng & Li Zhao, 2024. "The origin and structural evolution of de novo genes in Drosophila," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Jin Woo Oh & Michael A. Beer, 2024. "Gapped-kmer sequence modeling robustly identifies regulatory vocabularies and distal enhancers conserved between evolutionarily distant mammals," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- A. Talenti & J. Powell & J. D. Hemmink & E. A. J. Cook & D. Wragg & S. Jayaraman & E. Paxton & C. Ezeasor & E. T. Obishakin & E. R. Agusi & A. Tijjani & W. Amanyire & D. Muhanguzi & K. Marshall & A. F, 2022. "A cattle graph genome incorporating global breed diversity," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Alexander S. Leonard & Danang Crysnanto & Zih-Hua Fang & Michael P. Heaton & Brian L. Vander Ley & Carolina Herrera & Heinrich Bollwein & Derek M. Bickhart & Kristen L. Kuhn & Timothy P. L. Smith & Be, 2022. "Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
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