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SETD3 is an actin histidine methyltransferase that prevents primary dystocia

Author

Listed:
  • Alex W. Wilkinson

    (Stanford University)

  • Jonathan Diep

    (Stanford University School of Medicine)

  • Shaobo Dai

    (The University of Texas MD Anderson Cancer Center)

  • Shuo Liu

    (Stanford University)

  • Yaw Shin Ooi

    (Stanford University School of Medicine)

  • Dan Song

    (Stanford University School of Medicine)

  • Tie-Mei Li

    (Stanford University)

  • John R. Horton

    (The University of Texas MD Anderson Cancer Center)

  • Xing Zhang

    (The University of Texas MD Anderson Cancer Center)

  • Chao Liu

    (Stanford University School of Medicine)

  • Darshan V. Trivedi

    (Stanford University School of Medicine)

  • Katherine M. Ruppel

    (Stanford University School of Medicine)

  • José G. Vilches-Moure

    (Stanford University School of Medicine)

  • Kerriann M. Casey

    (Stanford University School of Medicine)

  • Justin Mak

    (Stanford Healthcare)

  • Tina Cowan

    (Stanford University School of Medicine)

  • Joshua E. Elias

    (Stanford University School of Medicine)

  • Claude M. Nagamine

    (Stanford University School of Medicine)

  • James A. Spudich

    (Stanford University School of Medicine)

  • Xiaodong Cheng

    (The University of Texas MD Anderson Cancer Center)

  • Jan E. Carette

    (Stanford University School of Medicine)

  • Or Gozani

    (Stanford University)

Abstract

For more than 50 years, the methylation of mammalian actin at histidine 73 has been known to occur1. Despite the pervasiveness of His73 methylation, which we find is conserved in several model animals and plants, its function remains unclear and the enzyme that generates this modification is unknown. Here we identify SET domain protein 3 (SETD3) as the physiological actin His73 methyltransferase. Structural studies reveal that an extensive network of interactions clamps the actin peptide onto the surface of SETD3 to orient His73 correctly within the catalytic pocket and to facilitate methyl transfer. His73 methylation reduces the nucleotide-exchange rate on actin monomers and modestly accelerates the assembly of actin filaments. Mice that lack SETD3 show complete loss of actin His73 methylation in several tissues, and quantitative proteomics analysis shows that actin His73 methylation is the only detectable physiological substrate of SETD3. SETD3-deficient female mice have severely decreased litter sizes owing to primary maternal dystocia that is refractory to ecbolic induction agents. Furthermore, depletion of SETD3 impairs signal-induced contraction in primary human uterine smooth muscle cells. Together, our results identify a mammalian histidine methyltransferase and uncover a pivotal role for SETD3 and actin His73 methylation in the regulation of smooth muscle contractility. Our data also support the broader hypothesis that protein histidine methylation acts as a common regulatory mechanism.

Suggested Citation

  • Alex W. Wilkinson & Jonathan Diep & Shaobo Dai & Shuo Liu & Yaw Shin Ooi & Dan Song & Tie-Mei Li & John R. Horton & Xing Zhang & Chao Liu & Darshan V. Trivedi & Katherine M. Ruppel & José G. Vilches-M, 2019. "SETD3 is an actin histidine methyltransferase that prevents primary dystocia," Nature, Nature, vol. 565(7739), pages 372-376, January.
  • Handle: RePEc:nat:nature:v:565:y:2019:i:7739:d:10.1038_s41586-018-0821-8
    DOI: 10.1038/s41586-018-0821-8
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    Citations

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    Cited by:

    1. Tanveer S. Batth & Jonas L. Simonsen & Cristina Hernández-Rollán & Søren Brander & Jens Preben Morth & Katja S. Johansen & Morten H. H. Nørholm & Jakob B. Hoof & Jesper V. Olsen, 2023. "A seven-transmembrane methyltransferase catalysing N-terminal histidine methylation of lytic polysaccharide monooxygenases," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    2. Yanyan Xue & Jun Li & Dian Chen & Xizhu Zhao & Liang Hong & Yu Liu, 2023. "Observation of structural switch in nascent SAM-VI riboswitch during transcription at single-nucleotide and single-molecule resolution," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    3. Keyun Wang & Li Zhang & Sirui Zhang & Ye Liu & Jiawei Mao & Zhen Liu & Lin Xu & Kejia Li & Jianshu Wang & Yanni Ma & Jiayi Wang & Haitao Li & Zefeng Wang & Guohui Li & Hong Cheng & Mingliang Ye, 2024. "Metabolic labeling based methylome profiling enables functional dissection of histidine methylation in C3H1 zinc fingers," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    4. Xiaopan Gao & Bei Wang & Kaixiang Zhu & Linyue Wang & Bo Qin & Kun Shang & Wei Ding & Jianwei Wang & Sheng Cui, 2024. "The EV71 2A protease occupies the central cleft of SETD3 and disrupts SETD3-actin interaction," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    5. Christine E. Peters & Ursula Schulze-Gahmen & Manon Eckhardt & Gwendolyn M. Jang & Jiewei Xu & Ernst H. Pulido & Conner Bardine & Charles S. Craik & Melanie Ott & Or Gozani & Kliment A. Verba & Ruth H, 2022. "Structure-function analysis of enterovirus protease 2A in complex with its essential host factor SETD3," Nature Communications, Nature, vol. 13(1), pages 1-15, December.

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