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Palladium-mediated enzyme activation suggests multiphase initiation of glycogenesis

Author

Listed:
  • Matthew K. Bilyard

    (University of Oxford)

  • Henry J. Bailey

    (University of Oxford)

  • Lluís Raich

    (Universitat de Barcelona)

  • Maria A. Gafitescu

    (University of Oxford)

  • Takuya Machida

    (University of Oxford)

  • Javier Iglésias-Fernández

    (Universitat de Barcelona
    Universitat de Girona)

  • Seung Seo Lee

    (University of Oxford
    University of Southampton)

  • Christopher D. Spicer

    (University of Oxford)

  • Carme Rovira

    (Universitat de Barcelona
    Institució Catalana de Recerca i Estudis Avançats (ICREA))

  • Wyatt W. Yue

    (University of Oxford)

  • Benjamin G. Davis

    (University of Oxford)

Abstract

Biosynthesis of glycogen, the essential glucose (and hence energy) storage molecule in humans, animals and fungi1, is initiated by the glycosyltransferase enzyme, glycogenin (GYG). Deficiencies in glycogen formation cause neurodegenerative and metabolic disease2–4, and mouse knockout5 and inherited human mutations6 of GYG impair glycogen synthesis. GYG acts as a ‘seed core’ for the formation of the glycogen particle by catalysing its own stepwise autoglucosylation to form a covalently bound gluco-oligosaccharide chain at initiation site Tyr 195. Precise mechanistic studies have so far been prevented by an inability to access homogeneous glycoforms of this protein, which unusually acts as both catalyst and substrate. Here we show that unprecedented direct access to different, homogeneously glucosylated states of GYG can be accomplished through a palladium-mediated enzyme activation ‘shunt’ process using on-protein C–C bond formation. Careful mimicry of GYG intermediates recapitulates catalytic activity at distinct stages, which in turn allows discovery of triphasic kinetics and substrate plasticity in GYG’s use of sugar substrates. This reveals a tolerant but ‘proof-read’ mechanism that underlies the precision of this metabolic process. The present demonstration of direct, chemically controlled access to intermediate states of active enzymes suggests that such ligation-dependent activation could be a powerful tool in the study of mechanism.

Suggested Citation

  • Matthew K. Bilyard & Henry J. Bailey & Lluís Raich & Maria A. Gafitescu & Takuya Machida & Javier Iglésias-Fernández & Seung Seo Lee & Christopher D. Spicer & Carme Rovira & Wyatt W. Yue & Benjamin G., 2018. "Palladium-mediated enzyme activation suggests multiphase initiation of glycogenesis," Nature, Nature, vol. 563(7730), pages 235-240, November.
  • Handle: RePEc:nat:nature:v:563:y:2018:i:7730:d:10.1038_s41586-018-0644-7
    DOI: 10.1038/s41586-018-0644-7
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    Citations

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    Cited by:

    1. Beatriz Piniello & Javier Macías-León & Shun Miyazaki & Ana García-García & Ismael Compañón & Mattia Ghirardello & Víctor Taleb & Billy Veloz & Francisco Corzana & Atsushi Miyagawa & Carme Rovira & Ra, 2023. "Molecular basis for bacterial N-glycosylation by a soluble HMW1C-like N-glycosyltransferase," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    2. Zhiyou Zong & Xuewen Zhang & Peng Chen & Zhuoyue Fu & Yan Zeng & Qian Wang & Christophe Chipot & Leila Lo Leggio & Yuanxia Sun, 2024. "Elucidation of the noncovalent interactions driving enzyme activity guides branching enzyme engineering for α-glucan modification," Nature Communications, Nature, vol. 15(1), pages 1-12, December.

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