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The Apostasia genome and the evolution of orchids

Author

Listed:
  • Guo-Qiang Zhang

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Ke-Wei Liu

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Zhen Li

    (Ghent University
    VIB Center for Plant Systems Biology)

  • Rolf Lohaus

    (Ghent University
    VIB Center for Plant Systems Biology)

  • Yu-Yun Hsiao

    (Orchid Research and Development Center, National Cheng Kung University
    National Cheng Kung University)

  • Shan-Ce Niu

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen
    State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences)

  • Jie-Yu Wang

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen
    College of Forestry, South China Agricultural University)

  • Yao-Cheng Lin

    (Ghent University
    VIB Center for Plant Systems Biology
    Agricultural Biotechnology Research Center, Academia Sinica)

  • Qing Xu

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Li-Jun Chen

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Kouki Yoshida

    (Technology Center, Taisei Corporation, Nase-cho 344-1, Totsuka-ku)

  • Sumire Fujiwara

    (Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6)

  • Zhi-Wen Wang

    (PubBio-Tech Services Corporation)

  • Yong-Qiang Zhang

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Nobutaka Mitsuda

    (Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6)

  • Meina Wang

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Guo-Hui Liu

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Lorenzo Pecoraro

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Hui-Xia Huang

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Xin-Ju Xiao

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Min Lin

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Xin-Yi Wu

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen)

  • Wan-Lin Wu

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen
    Orchid Research and Development Center, National Cheng Kung University)

  • You-Yi Chen

    (Orchid Research and Development Center, National Cheng Kung University
    National Cheng Kung University)

  • Song-Bin Chang

    (Orchid Research and Development Center, National Cheng Kung University
    National Cheng Kung University)

  • Shingo Sakamoto

    (Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6)

  • Masaru Ohme-Takagi

    (Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6
    Graduate School of Science and Engineering, Saitama University)

  • Masafumi Yagi

    (NARO Institute of Floricultural Science (NIFS), 2-1 Fujimoto)

  • Si-Jin Zeng

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen
    College of Forestry, South China Agricultural University)

  • Ching-Yu Shen

    (Institute of Tropical Plant Sciences, National Cheng Kung University)

  • Chuan-Ming Yeh

    (Graduate School of Science and Engineering, Saitama University)

  • Yi-Bo Luo

    (State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences)

  • Wen-Chieh Tsai

    (Orchid Research and Development Center, National Cheng Kung University
    National Cheng Kung University
    Institute of Tropical Plant Sciences, National Cheng Kung University)

  • Yves Van de Peer

    (Ghent University
    VIB Center for Plant Systems Biology
    Genomics Research Institute)

  • Zhong-Jian Liu

    (Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen
    College of Forestry, South China Agricultural University
    College of Landscape Architecture, Fujian Agriculture and Forestry University
    The Center for Biotechnology and BioMedicine, Graduate School at Shenzhen, Tsinghua University)

Abstract

WebComparing the whole genome sequence of Apostasia shenzhenica with transcriptome and genome data from five orchid subfamilies permits the reconstruction of an ancestral gene toolkit, providing insight into orchid origins, evolution and diversification.

Suggested Citation

  • Guo-Qiang Zhang & Ke-Wei Liu & Zhen Li & Rolf Lohaus & Yu-Yun Hsiao & Shan-Ce Niu & Jie-Yu Wang & Yao-Cheng Lin & Qing Xu & Li-Jun Chen & Kouki Yoshida & Sumire Fujiwara & Zhi-Wen Wang & Yong-Qiang Zh, 2017. "The Apostasia genome and the evolution of orchids," Nature, Nature, vol. 549(7672), pages 379-383, September.
    • Handle: RePEc:nat:nature:v:549:y:2017:i:7672:d:10.1038_nature23897
    DOI: 10.1038/nature23897
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    Citations

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    Cited by:

    1. Jessen V. Bredeson & Jessica B. Lyons & Ibukun O. Oniyinde & Nneka R. Okereke & Olufisayo Kolade & Ikenna Nnabue & Christian O. Nwadili & Eva Hřibová & Matthew Parker & Jeremiah Nwogha & Shengqiang Sh, 2022. "Chromosome evolution and the genetic basis of agronomically important traits in greater yam," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    2. Nanqiao Liao & Zhongyuan Hu & Jinshan Miao & Xiaodi Hu & Xiaolong Lyu & Haitian Fang & Yi-Mei Zhou & Ahmed Mahmoud & Guancong Deng & Yi-Qing Meng & Kejia Zhang & Yu-Yuan Ma & Yuelin Xia & Meng Zhao & , 2022. "Chromosome-level genome assembly of bunching onion illuminates genome evolution and flavor formation in Allium crops," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    3. Fei Shen & Yajuan Qin & Rui Wang & Xin Huang & Ying Wang & Tiangang Gao & Junna He & Yue Zhou & Yuannian Jiao & Jianhua Wei & Lei Li & Xiaozeng Yang, 2023. "Comparative genomics reveals a unique nitrogen-carbon balance system in Asteraceae," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    4. Xiaolong Lyu & Ping Li & Liang Jin & Feng Yang & Boas Pucker & Chenhao Wang & Linye Liu & Meng Zhao & Lu Shi & Yutong Zhang & Qinrong Yang & Kuangtian Xu & Xiao Li & Zhongyuan Hu & Jinghua Yang & Jing, 2024. "Tracing the evolutionary and genetic footprints of atmospheric tillandsioids transition from land to air," Nature Communications, Nature, vol. 15(1), pages 1-23, December.
    5. Alessia Russo & Mattia Alessandrini & Moaine El Baidouri & Daniel Frei & Teresa Rosa Galise & Lara Gaidusch & Hannah F. Oertel & Sara E. Garcia Morales & Giacomo Potente & Qin Tian & Dmitry Smetanin &, 2024. "Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    6. Liang Ma & Ke-Wei Liu & Zhen Li & Yu-Yun Hsiao & Yiying Qi & Tao Fu & Guang-Da Tang & Diyang Zhang & Wei-Hong Sun & Ding-Kun Liu & Yuanyuan Li & Gui-Zhen Chen & Xue-Die Liu & Xing-Yu Liao & Yu-Ting Ji, 2023. "Diploid and tetraploid genomes of Acorus and the evolution of monocots," Nature Communications, Nature, vol. 14(1), pages 1-18, December.

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