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Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

Author

Listed:
  • Thomas Mock

    (School of Environmental Sciences, University of East Anglia)

  • Robert P. Otillar

    (Department of Energy Joint Genome Institute)

  • Jan Strauss

    (School of Environmental Sciences, University of East Anglia
    †Present addresses: European Molecular Biology Laboratory (EMBL) Hamburg, c/o German Electron Synchrotron (DESY), Notkestraβe 85, 22607 Hamburg, Germany (J.St.); Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom (P.P.); Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia (A.V.); Coastal Studies Center, Bowdoin College, Brunswick, Maine 04011, USA (B.R.L.); Graduate School of Oceanography, University of Rhode Island, 215 South Ferry Road, Narragansett, Rhode Island 02882-1197, USA (C.U.).)

  • Mark McMullan

    (Earlham Institute, Norwich Research Park)

  • Pirita Paajanen

    (Earlham Institute, Norwich Research Park
    †Present addresses: European Molecular Biology Laboratory (EMBL) Hamburg, c/o German Electron Synchrotron (DESY), Notkestraβe 85, 22607 Hamburg, Germany (J.St.); Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom (P.P.); Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia (A.V.); Coastal Studies Center, Bowdoin College, Brunswick, Maine 04011, USA (B.R.L.); Graduate School of Oceanography, University of Rhode Island, 215 South Ferry Road, Narragansett, Rhode Island 02882-1197, USA (C.U.).)

  • Jeremy Schmutz

    (Department of Energy Joint Genome Institute
    HudsonAlpha Institute for Biotechnology)

  • Asaf Salamov

    (Department of Energy Joint Genome Institute)

  • Remo Sanges

    (Biology and Evolution of Marine Organisms, Computational Genomics, Stazione Zoologica Anton Dohrn)

  • Andrew Toseland

    (School of Computing Sciences, University of East Anglia)

  • Ben J. Ward

    (School of Environmental Sciences, University of East Anglia
    Earlham Institute, Norwich Research Park)

  • Andrew E. Allen

    (Microbial and Environmental Genomics, J. Craig Venter Institute
    Scripps Institution of Oceanography, UC San Diego)

  • Christopher L. Dupont

    (Microbial and Environmental Genomics, J. Craig Venter Institute)

  • Stephan Frickenhaus

    (Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- and Meeresforschung, Am Handelshafen 12
    Hochschule Bremerhaven, An der Karlsburg 8)

  • Florian Maumus

    (URGI, INRA, Université Paris-Saclay)

  • Alaguraj Veluchamy

    (Ecole Normale Supérieure, PSL Research University, Institut de Biologie de l’Ecole Normale Supérieure (IBENS), CNRS UMR 8197, INSERM U1024
    †Present addresses: European Molecular Biology Laboratory (EMBL) Hamburg, c/o German Electron Synchrotron (DESY), Notkestraβe 85, 22607 Hamburg, Germany (J.St.); Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom (P.P.); Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia (A.V.); Coastal Studies Center, Bowdoin College, Brunswick, Maine 04011, USA (B.R.L.); Graduate School of Oceanography, University of Rhode Island, 215 South Ferry Road, Narragansett, Rhode Island 02882-1197, USA (C.U.).)

  • Taoyang Wu

    (School of Computing Sciences, University of East Anglia)

  • Kerrie W. Barry

    (Department of Energy Joint Genome Institute)

  • Angela Falciatore

    (Sorbonne Universités, UPMC, Institut de Biologie Paris-Seine, CNRS, Laboratoire de Biologie Computationnelle et Quantitative UMR 7238)

  • Maria I. Ferrante

    (Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Villa Comunale)

  • Antonio E. Fortunato

    (Sorbonne Universités, UPMC, Institut de Biologie Paris-Seine, CNRS, Laboratoire de Biologie Computationnelle et Quantitative UMR 7238)

  • Gernot Glöckner

    (Institute for Biochemistry I, Medical Faculty, University of Cologne
    Leibniz Institute of Freshwater, Ecology and Inland Fisheries)

  • Ansgar Gruber

    (Fachbereich Biologie, Universität Konstanz)

  • Rachel Hipkin

    (School of Environmental Sciences, University of East Anglia)

  • Michael G. Janech

    (Medical University of South Carolina, Charleston)

  • Peter G. Kroth

    (Fachbereich Biologie, Universität Konstanz)

  • Florian Leese

    (University of Duisburg-Essen, Faculty of Biology, Aquatic Ecosystem Research Universitaetsstrasse 5)

  • Erika A. Lindquist

    (Department of Energy Joint Genome Institute)

  • Barbara R. Lyon

    (Marine Biomedicine and Environmental Sciences Center, Medical University of South Carolina, Charleston
    †Present addresses: European Molecular Biology Laboratory (EMBL) Hamburg, c/o German Electron Synchrotron (DESY), Notkestraβe 85, 22607 Hamburg, Germany (J.St.); Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom (P.P.); Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia (A.V.); Coastal Studies Center, Bowdoin College, Brunswick, Maine 04011, USA (B.R.L.); Graduate School of Oceanography, University of Rhode Island, 215 South Ferry Road, Narragansett, Rhode Island 02882-1197, USA (C.U.).)

  • Joel Martin

    (Department of Energy Joint Genome Institute)

  • Christoph Mayer

    (Zoologisches Forschungsmuseum Alexander Koenig, Leibniz Institut für Biodiversität der Tiere, Adenauerallee 160)

  • Micaela Parker

    (School of Oceanography, Center for Environmental Genomics, University of Washington)

  • Hadi Quesneville

    (URGI, INRA, Université Paris-Saclay)

  • James A. Raymond

    (School of Life Sciences, University of Nevada)

  • Christiane Uhlig

    (Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- and Meeresforschung, Am Handelshafen 12
    †Present addresses: European Molecular Biology Laboratory (EMBL) Hamburg, c/o German Electron Synchrotron (DESY), Notkestraβe 85, 22607 Hamburg, Germany (J.St.); Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom (P.P.); Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia (A.V.); Coastal Studies Center, Bowdoin College, Brunswick, Maine 04011, USA (B.R.L.); Graduate School of Oceanography, University of Rhode Island, 215 South Ferry Road, Narragansett, Rhode Island 02882-1197, USA (C.U.).)

  • Ruben E. Valas

    (Microbial and Environmental Genomics, J. Craig Venter Institute)

  • Klaus U. Valentin

    (Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- and Meeresforschung, Am Handelshafen 12)

  • Alexandra Z. Worden

    (Monterey Bay Aquarium Research Institute, 7700 Sandholdt Road)

  • E. Virginia Armbrust

    (School of Oceanography, Center for Environmental Genomics, University of Washington)

  • Matthew D. Clark

    (School of Environmental Sciences, University of East Anglia
    Earlham Institute, Norwich Research Park)

  • Chris Bowler

    (Ecole Normale Supérieure, PSL Research University, Institut de Biologie de l’Ecole Normale Supérieure (IBENS), CNRS UMR 8197, INSERM U1024)

  • Beverley R. Green

    (University of British Columbia, 3529-6270 University Boulevard, Vancouver)

  • Vincent Moulton

    (School of Computing Sciences, University of East Anglia)

  • Cock van Oosterhout

    (School of Environmental Sciences, University of East Anglia)

  • Igor V. Grigoriev

    (Department of Energy Joint Genome Institute
    University of California)

Abstract

The genome of the Southern Ocean phytoplankton Fragilariopsis cylindrus differs markedly from the genomes of its more temperate relatives, with divergent alleles being differentially expressed in environmentally specific conditions such as freezing and darkness.

Suggested Citation

  • Thomas Mock & Robert P. Otillar & Jan Strauss & Mark McMullan & Pirita Paajanen & Jeremy Schmutz & Asaf Salamov & Remo Sanges & Andrew Toseland & Ben J. Ward & Andrew E. Allen & Christopher L. Dupont , 2017. "Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus," Nature, Nature, vol. 541(7638), pages 536-540, January.
    • Handle: RePEc:nat:nature:v:541:y:2017:i:7638:d:10.1038_nature20803
    DOI: 10.1038/nature20803
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