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DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions

Author

Listed:
  • Wendy Huang

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine)

  • Benjamin Thomas

    (Sir William Dunn School of Pathology, University of Oxford)

  • Ryan A. Flynn

    (Center for Personal Dynamic Regulomes, Stanford University)

  • Samuel J. Gavzy

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine)

  • Lin Wu

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine)

  • Sangwon V. Kim

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine)

  • Jason A. Hall

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine)

  • Emily R. Miraldi

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine
    Center for Genomics and Systems Biology, New York University
    Courant Institute of Mathematical Sciences, New York University
    Simons Center for Data Analysis, Simons Foundation)

  • Charles P. Ng

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine)

  • Frank Rigo

    (Isis Pharmaceuticals)

  • Sarah Meadows

    (HudsonAlpha Institute for Biotechnology)

  • Nina R. Montoya

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine)

  • Natalia G. Herrera

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine)

  • Ana I. Domingos

    (Instituto Gulbenkian de Ciencia)

  • Fraydoon Rastinejad

    (Integrative Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute)

  • Richard M. Myers

    (HudsonAlpha Institute for Biotechnology)

  • Frances V. Fuller-Pace

    (University of Dundee)

  • Richard Bonneau

    (Center for Genomics and Systems Biology, New York University
    Courant Institute of Mathematical Sciences, New York University
    Simons Center for Data Analysis, Simons Foundation)

  • Howard Y. Chang

    (Center for Personal Dynamic Regulomes, Stanford University)

  • Oreste Acuto

    (Sir William Dunn School of Pathology, University of Oxford)

  • Dan R. Littman

    (The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine
    Howard Hughes Medical Institute, New York University School of Medicine)

Abstract

T helper 17 (TH17) lymphocytes protect mucosal barriers from infections, but also contribute to multiple chronic inflammatory diseases. Their differentiation is controlled by RORγt, a ligand-regulated nuclear receptor. Here we identify the RNA helicase DEAD-box protein 5 (DDX5) as a RORγt partner that coordinates transcription of selective TH17 genes, and is required for TH17-mediated inflammatory pathologies. Surprisingly, the ability of DDX5 to interact with RORγt and coactivate its targets depends on intrinsic RNA helicase activity and binding of a conserved nuclear long noncoding RNA (lncRNA), Rmrp, which is mutated in patients with cartilage-hair hypoplasia. A targeted Rmrp gene mutation in mice, corresponding to a gene mutation in cartilage-hair hypoplasia patients, altered lncRNA chromatin occupancy, and reduced the DDX5–RORγt interaction and RORγt target gene transcription. Elucidation of the link between Rmrp and the DDX5–RORγt complex reveals a role for RNA helicases and lncRNAs in tissue-specific transcriptional regulation, and provides new opportunities for therapeutic intervention in TH17-dependent diseases.

Suggested Citation

  • Wendy Huang & Benjamin Thomas & Ryan A. Flynn & Samuel J. Gavzy & Lin Wu & Sangwon V. Kim & Jason A. Hall & Emily R. Miraldi & Charles P. Ng & Frank Rigo & Sarah Meadows & Nina R. Montoya & Natalia G., 2015. "DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions," Nature, Nature, vol. 528(7583), pages 517-522, December.
  • Handle: RePEc:nat:nature:v:528:y:2015:i:7583:d:10.1038_nature16193
    DOI: 10.1038/nature16193
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