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Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

Author

Listed:
  • Robert VanBuren

    (Donald Danforth Plant Science Center)

  • Doug Bryant

    (Donald Danforth Plant Science Center)

  • Patrick P. Edger

    (University of California Berkeley
    Michigan State University)

  • Haibao Tang

    (iPlant Collaborative, School of Plant Sciences, University of Arizona
    Center for Genomics and Biotechnology, Haixia Institute of Science and Technology (HIST), Fujian Agriculture and Forestry University)

  • Diane Burgess

    (University of California Berkeley)

  • Dinakar Challabathula

    (IMBIO, University of Bonn
    † Present address: Department of Life Sciences, School of Basic and Applied Sciences, Central University of Tamil Nadu, Thiruvarur 610101, India.)

  • Kristi Spittle

    (Pacific Biosciences)

  • Richard Hall

    (Pacific Biosciences)

  • Jenny Gu

    (Pacific Biosciences)

  • Eric Lyons

    (iPlant Collaborative, School of Plant Sciences, University of Arizona)

  • Michael Freeling

    (University of California Berkeley)

  • Dorothea Bartels

    (IMBIO, University of Bonn)

  • Boudewijn Ten Hallers

    (BioNano Genomics)

  • Alex Hastie

    (BioNano Genomics)

  • Todd P. Michael

    (Ibis Biosciences)

  • Todd C. Mockler

    (Donald Danforth Plant Science Center)

Abstract

Oropetium thomaeum is a resurrection plant that can survive extreme water stress through desiccation to complete dryness, providing a model for drought tolerance; here, whole-genome sequencing and assembly of the Oropetium genome using single-molecule real-time sequencing is reported.

Suggested Citation

  • Robert VanBuren & Doug Bryant & Patrick P. Edger & Haibao Tang & Diane Burgess & Dinakar Challabathula & Kristi Spittle & Richard Hall & Jenny Gu & Eric Lyons & Michael Freeling & Dorothea Bartels & B, 2015. "Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum," Nature, Nature, vol. 527(7579), pages 508-511, November.
    • Handle: RePEc:nat:nature:v:527:y:2015:i:7579:d:10.1038_nature15714
    DOI: 10.1038/nature15714
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    Cited by:

    1. Haifei Hu & Armin Scheben & David Edwards, 2018. "Advances in Integrating Genomics and Bioinformatics in the Plant Breeding Pipeline," Agriculture, MDPI, vol. 8(6), pages 1-18, May.
    2. Dongya Wu & Enhui Shen & Bowen Jiang & Yu Feng & Wei Tang & Sangting Lao & Lei Jia & Han-Yang Lin & Lingjuan Xie & Xifang Weng & Chenfeng Dong & Qinghong Qian & Feng Lin & Haiming Xu & Huabing Lu & Lu, 2022. "Genomic insights into the evolution of Echinochloa species as weed and orphan crop," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    3. Xiaolong Lyu & Ping Li & Liang Jin & Feng Yang & Boas Pucker & Chenhao Wang & Linye Liu & Meng Zhao & Lu Shi & Yutong Zhang & Qinrong Yang & Kuangtian Xu & Xiao Li & Zhongyuan Hu & Jinghua Yang & Jing, 2024. "Tracing the evolutionary and genetic footprints of atmospheric tillandsioids transition from land to air," Nature Communications, Nature, vol. 15(1), pages 1-23, December.

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