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Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

Author

Listed:
  • Jenni Hultman

    (Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California, 94720, USA
    Present addresses: Department of Food Safety and Environmental Health, Agnes Sjöbergin katu 2, University of Helsinki, Helsinki 00014, Finland (J.H.); Oak Ridge National Laboratory, Biosciences Division, Tennessee 37831, USA (M.B.S.); Celgene Corporation, 1500 Owens Street, San Francisco, California 94158-2335, USA (K.M.); Biological Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, Washington 99352, USA (J.K.J.).)

  • Mark P. Waldrop

    (US Geological Survey, 345 Middlefield Road)

  • Rachel Mackelprang

    (18111 Nordhoff Street, California State University Northridge
    2800 Mitchell Drive)

  • Maude M. David

    (Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California, 94720, USA)

  • Jack McFarland

    (US Geological Survey, 345 Middlefield Road)

  • Steven J. Blazewicz

    (US Geological Survey, 345 Middlefield Road)

  • Jennifer Harden

    (US Geological Survey, 345 Middlefield Road)

  • Merritt R. Turetsky

    (50 Stone Road East, University of Guelph, Guelph, Ontario N1G 2W1, Canada)

  • A. David McGuire

    (US Geological Survey, Alaska Cooperative Fish and Wildlife Research Unit, 211A Irving I Building, University of Alaska Fairbanks)

  • Manesh B. Shah

    (One Bethel Valley Road, Building 1059, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6420, USA
    Present addresses: Department of Food Safety and Environmental Health, Agnes Sjöbergin katu 2, University of Helsinki, Helsinki 00014, Finland (J.H.); Oak Ridge National Laboratory, Biosciences Division, Tennessee 37831, USA (M.B.S.); Celgene Corporation, 1500 Owens Street, San Francisco, California 94158-2335, USA (K.M.); Biological Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, Washington 99352, USA (J.K.J.).)

  • Nathan C. VerBerkmoes

    (One Bethel Valley Road, Building 1059, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6420, USA)

  • Lang Ho Lee

    (Graduate School of Genome Science and Technology, University of Tennessee and Oak Ridge National Laboratory, 2510 River Drive, Knoxville, Tennessee 37996, USA)

  • Kostas Mavrommatis

    (2800 Mitchell Drive
    Present addresses: Department of Food Safety and Environmental Health, Agnes Sjöbergin katu 2, University of Helsinki, Helsinki 00014, Finland (J.H.); Oak Ridge National Laboratory, Biosciences Division, Tennessee 37831, USA (M.B.S.); Celgene Corporation, 1500 Owens Street, San Francisco, California 94158-2335, USA (K.M.); Biological Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, Washington 99352, USA (J.K.J.).)

  • Janet K. Jansson

    (Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California, 94720, USA
    2800 Mitchell Drive
    111 Koshland Hall, University of California, Berkeley, Berkeley, California 94720, USA
    Center for Permafrost Research (CENPERM), Universitetsparken 15, University of Copenhagen, Copenhagen, DK-2100 Copenhagen, Denmark)

Abstract

A multi-omics approach, integrating metagenomics, metatranscriptomics and metaproteomics, determines the phylogenetic composition of the microbial community and assesses its functional potential and activity along a thaw transition from intact permafrost to thermokast bog.

Suggested Citation

  • Jenni Hultman & Mark P. Waldrop & Rachel Mackelprang & Maude M. David & Jack McFarland & Steven J. Blazewicz & Jennifer Harden & Merritt R. Turetsky & A. David McGuire & Manesh B. Shah & Nathan C. Ver, 2015. "Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes," Nature, Nature, vol. 521(7551), pages 208-212, May.
    • Handle: RePEc:nat:nature:v:521:y:2015:i:7551:d:10.1038_nature14238
    DOI: 10.1038/nature14238
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    Cited by:

    1. Juan Pedro Rodríguez-López & Chihua Wu & Tatiana A. Vishnivetskaya & Julian B. Murton & Wenqiang Tang & Chao Ma, 2022. "Permafrost in the Cretaceous supergreenhouse," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    2. Luyao Kang & Yutong Song & Rachel Mackelprang & Dianye Zhang & Shuqi Qin & Leiyi Chen & Linwei Wu & Yunfeng Peng & Yuanhe Yang, 2024. "Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    3. Komi S Messan & Robert M Jones & Stacey J Doherty & Karen Foley & Thomas A Douglas & Robyn A Barbato, 2020. "The role of changing temperature in microbial metabolic processes during permafrost thaw," PLOS ONE, Public Library of Science, vol. 15(4), pages 1-20, April.
    4. Jinyang Liu & Yun Lin & Jinbin Chen & Chenchen Xue & Ranran Wu & Qiang Yan & Xin Chen & Xingxing Yuan, 2022. "Identification and Clarification of VrCYCA1 : A Key Genic Male Sterility-Related Gene in Mungbean by Multi-Omics Analysis," Agriculture, MDPI, vol. 12(5), pages 1-17, May.

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