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An Arabidopsis gene regulatory network for secondary cell wall synthesis

Author

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  • M. Taylor-Teeples

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA
    Genome Center, University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • L. Lin

    (University of Massachusetts
    Present addresses: Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA (L.L.); Department of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Houston, Texas 77030, USA (G.B.); Molecular and Computational Biology Section, University of Southern California, Los Angeles, California 90089, USA (S.A.K.).)

  • M. de Lucas

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA
    Genome Center, University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • G. Turco

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA
    Genome Center, University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • T. W. Toal

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA
    Genome Center, University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • A. Gaudinier

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA
    Genome Center, University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • N. F. Young

    (University of Massachusetts)

  • G. M. Trabucco

    (University of Massachusetts)

  • M. T. Veling

    (University of Massachusetts)

  • R. Lamothe

    (University of Massachusetts)

  • P. P. Handakumbura

    (University of Massachusetts)

  • G. Xiong

    (University of California Berkeley)

  • C. Wang

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • J. Corwin

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • A. Tsoukalas

    (Genome Center, University of California Davis, One Shields Avenue, Davis, California 95616, USA
    University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • L. Zhang

    (Cold Spring Harbor Laboratory)

  • D. Ware

    (Cold Spring Harbor Laboratory
    Agricultural Research Service)

  • M. Pauly

    (University of California Berkeley)

  • D. J. Kliebenstein

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • K. Dehesh

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • I. Tagkopoulos

    (Genome Center, University of California Davis, One Shields Avenue, Davis, California 95616, USA
    University of California Davis, One Shields Avenue, Davis, California 95616, USA)

  • G. Breton

    (Section of Cell and Developmental Biology, University of California San Diego
    Present addresses: Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA (L.L.); Department of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Houston, Texas 77030, USA (G.B.); Molecular and Computational Biology Section, University of Southern California, Los Angeles, California 90089, USA (S.A.K.).)

  • J. L. Pruneda-Paz

    (Section of Cell and Developmental Biology, University of California San Diego)

  • S. E. Ahnert

    (Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge CB3 0HE, UK)

  • S. A. Kay

    (Section of Cell and Developmental Biology, University of California San Diego
    Present addresses: Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA (L.L.); Department of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Houston, Texas 77030, USA (G.B.); Molecular and Computational Biology Section, University of Southern California, Los Angeles, California 90089, USA (S.A.K.).)

  • S. P. Hazen

    (University of Massachusetts)

  • S. M. Brady

    (University of California Davis, One Shields Avenue, Davis, California 95616, USA
    Genome Center, University of California Davis, One Shields Avenue, Davis, California 95616, USA)

Abstract

The plant cell wall is an important factor for determining cell shape, function and response to the environment. Secondary cell walls, such as those found in xylem, are composed of cellulose, hemicelluloses and lignin and account for the bulk of plant biomass. The coordination between transcriptional regulation of synthesis for each polymer is complex and vital to cell function. A regulatory hierarchy of developmental switches has been proposed, although the full complement of regulators remains unknown. Here we present a protein–DNA network between Arabidopsis thaliana transcription factors and secondary cell wall metabolic genes with gene expression regulated by a series of feed-forward loops. This model allowed us to develop and validate new hypotheses about secondary wall gene regulation under abiotic stress. Distinct stresses are able to perturb targeted genes to potentially promote functional adaptation. These interactions will serve as a foundation for understanding the regulation of a complex, integral plant component.

Suggested Citation

  • M. Taylor-Teeples & L. Lin & M. de Lucas & G. Turco & T. W. Toal & A. Gaudinier & N. F. Young & G. M. Trabucco & M. T. Veling & R. Lamothe & P. P. Handakumbura & G. Xiong & C. Wang & J. Corwin & A. Ts, 2015. "An Arabidopsis gene regulatory network for secondary cell wall synthesis," Nature, Nature, vol. 517(7536), pages 571-575, January.
    • Handle: RePEc:nat:nature:v:517:y:2015:i:7536:d:10.1038_nature14099
    DOI: 10.1038/nature14099
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    Cited by:

    1. Xiaolong Lyu & Ping Li & Liang Jin & Feng Yang & Boas Pucker & Chenhao Wang & Linye Liu & Meng Zhao & Lu Shi & Yutong Zhang & Qinrong Yang & Kuangtian Xu & Xiao Li & Zhongyuan Hu & Jinghua Yang & Jing, 2024. "Tracing the evolutionary and genetic footprints of atmospheric tillandsioids transition from land to air," Nature Communications, Nature, vol. 15(1), pages 1-23, December.
    2. Sameer Dixit & Krishnappa Chandrashekar & Santosh Kumar Upadhyay & Praveen Chandra Verma, 2023. "Transcriptional Plasticity and Cell Wall Characterization in High-Methanol-Producing Transgenic Tobacco Plants," Agriculture, MDPI, vol. 13(3), pages 1-12, February.

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