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Structural basis for leucine-rich nuclear export signal recognition by CRM1

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  • Xiuhua Dong

    (University of Texas Southwestern Medical Center at Dallas, 6001 Forest Park, Dallas, Texas 75390-9041, USA)

  • Anindita Biswas

    (University of Texas Southwestern Medical Center at Dallas, 6001 Forest Park, Dallas, Texas 75390-9041, USA)

  • Katherine E. Süel

    (University of Texas Southwestern Medical Center at Dallas, 6001 Forest Park, Dallas, Texas 75390-9041, USA)

  • Laurie K. Jackson

    (University of Texas Southwestern Medical Center at Dallas, 6001 Forest Park, Dallas, Texas 75390-9041, USA)

  • Rita Martinez

    (University of Texas Southwestern Medical Center at Dallas, 6001 Forest Park, Dallas, Texas 75390-9041, USA)

  • Hongmei Gu

    (University of Texas Southwestern Medical Center at Dallas, 6001 Forest Park, Dallas, Texas 75390-9041, USA)

  • Yuh Min Chook

    (University of Texas Southwestern Medical Center at Dallas, 6001 Forest Park, Dallas, Texas 75390-9041, USA)

Abstract

CRM1 (also known as XPO1 and exportin 1) mediates nuclear export of hundreds of proteins through the recognition of the leucine-rich nuclear export signal (LR-NES). Here we present the 2.9 Å structure of CRM1 bound to snurportin 1 (SNUPN). Snurportin 1 binds CRM1 in a bipartite manner by means of an amino-terminal LR-NES and its nucleotide-binding domain. The LR-NES is a combined α-helical-extended structure that occupies a hydrophobic groove between two CRM1 outer helices. The LR-NES interface explains the consensus hydrophobic pattern, preference for intervening electronegative residues and inhibition by leptomycin B. The second nuclear export signal epitope is a basic surface on the snurportin 1 nucleotide-binding domain, which binds an acidic patch on CRM1 adjacent to the LR-NES site. Multipartite recognition of individually weak nuclear export signal epitopes may be common to CRM1 substrates, enhancing CRM1 binding beyond the generally low affinity LR-NES. Similar energetic construction is also used in multipartite nuclear localization signals to provide broad substrate specificity and rapid evolution in nuclear transport.

Suggested Citation

  • Xiuhua Dong & Anindita Biswas & Katherine E. Süel & Laurie K. Jackson & Rita Martinez & Hongmei Gu & Yuh Min Chook, 2009. "Structural basis for leucine-rich nuclear export signal recognition by CRM1," Nature, Nature, vol. 458(7242), pages 1136-1141, April.
  • Handle: RePEc:nat:nature:v:458:y:2009:i:7242:d:10.1038_nature07975
    DOI: 10.1038/nature07975
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    Cited by:

    1. Shunichi Kosugi & Hiroshi Yanagawa & Ryohei Terauchi & Satoshi Tabata, 2014. "NESmapper: Accurate Prediction of Leucine-Rich Nuclear Export Signals Using Activity-Based Profiles," PLOS Computational Biology, Public Library of Science, vol. 10(9), pages 1-11, September.
    2. Qi Ye & Jian Ma & Zixi Wang & Lei Li & Tianjie Liu & Bin Wang & Lizhe Zhu & Yuzeshi Lei & Shan Xu & Ke Wang & Yanlin Jian & Bohan Ma & Yizeng Fan & Jing Liu & Yang Gao & Haojie Huang & Lei Li, 2024. "DTX3L-mediated TIRR nuclear export and degradation regulates DNA repair pathway choice and PARP inhibitor sensitivity," Nature Communications, Nature, vol. 15(1), pages 1-15, December.

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