IDEAS home Printed from https://ideas.repec.org/a/nat/nature/v399y1999i6734d10.1038_20601.html
   My bibliography  Save this article

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

Author

Listed:
  • Karen E. Nelson

    (the Institute for Genomic Research)

  • Rebecca A. Clayton

    (the Institute for Genomic Research)

  • Steven R. Gill

    (the Institute for Genomic Research)

  • Michelle L. Gwinn

    (the Institute for Genomic Research)

  • Robert J. Dodson

    (the Institute for Genomic Research)

  • Daniel H. Haft

    (the Institute for Genomic Research)

  • Erin K. Hickey

    (the Institute for Genomic Research)

  • Jeremy D. Peterson

    (the Institute for Genomic Research)

  • William C. Nelson

    (the Institute for Genomic Research)

  • Karen A. Ketchum

    (the Institute for Genomic Research)

  • Lisa McDonald

    (the Institute for Genomic Research)

  • Teresa R. Utterback

    (the Institute for Genomic Research)

  • Joel A. Malek

    (the Institute for Genomic Research)

  • Katja D. Linher

    (the Institute for Genomic Research)

  • Mina M. Garrett

    (the Institute for Genomic Research)

  • Ashley M. Stewart

    (the Institute for Genomic Research)

  • Matthew D. Cotton

    (the Institute for Genomic Research)

  • Matthew S. Pratt

    (the Institute for Genomic Research)

  • Cheryl A. Phillips

    (the Institute for Genomic Research)

  • Delwood Richardson

    (the Institute for Genomic Research)

  • John Heidelberg

    (the Institute for Genomic Research)

  • Granger G. Sutton

    (the Institute for Genomic Research)

  • Robert D. Fleischmann

    (the Institute for Genomic Research)

  • Jonathan A. Eisen

    (the Institute for Genomic Research)

  • Owen White

    (the Institute for Genomic Research)

  • Steven L. Salzberg

    (the Institute for Genomic Research)

  • Hamilton O. Smith

    (the Institute for Genomic Research)

  • J. Craig Venter

    (the Institute for Genomic Research)

  • Claire M. Fraser

    (the Institute for Genomic Research)

Abstract

The 1,860,725-base-pair genome of Thermotoga maritima MSB8 contains 1,877 predicted coding regions, 1,014 (54%) of which have functional assignments and 863 (46%) of which are of unknown function. Genome analysis reveals numerous pathways involved in degradation of sugars and plant polysaccharides, and 108 genes that have orthologues only in the genomes of other thermophilic Eubacteria and Archaea. Of the Eubacteria sequenced to date, T.maritima has the highest percentage (24%) of genes that are most similar to archaeal genes. Eighty-one archaeal-like genes are clustered in 15 regions of the T. maritima genome that range in size from 4 to 20 kilobases. Conservation of gene order between T. maritima and Archaea in many of the clustered regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea.

Suggested Citation

  • Karen E. Nelson & Rebecca A. Clayton & Steven R. Gill & Michelle L. Gwinn & Robert J. Dodson & Daniel H. Haft & Erin K. Hickey & Jeremy D. Peterson & William C. Nelson & Karen A. Ketchum & Lisa McDona, 1999. "Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima," Nature, Nature, vol. 399(6734), pages 323-329, May.
    • Handle: RePEc:nat:nature:v:399:y:1999:i:6734:d:10.1038_20601
    DOI: 10.1038/20601
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/20601
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.
    File URL: https://libkey.io/10.1038/20601?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Hao Leng & Yinzhao Wang & Weishu Zhao & Stefan M. Sievert & Xiang Xiao, 2023. "Identification of a deep-branching thermophilic clade sheds light on early bacterial evolution," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    2. Nunzia Esercizio & Mariamichela Lanzilli & Marco Vastano & Simone Landi & Zhaohui Xu & Carmela Gallo & Genoveffa Nuzzo & Emiliano Manzo & Angelo Fontana & Giuliana d’Ippolito, 2021. "Fermentation of Biodegradable Organic Waste by the Family Thermotogaceae," Resources, MDPI, vol. 10(4), pages 1-26, April.
    3. Y.-H. Percival Zhang & Jonathan R. Mielenz, 2011. "Renewable Hydrogen Carrier — Carbohydrate: Constructing the Carbon-Neutral Carbohydrate Economy," Energies, MDPI, vol. 4(2), pages 1-22, January.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:nature:v:399:y:1999:i:6734:d:10.1038_20601. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no bibliographic references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.