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Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function

Author

Listed:
  • Annah B. Wyss

    (US Department of Health and Human Services)

  • Tamar Sofer

    (Brigham and Women’s Hospital
    Harvard Medical School)

  • Mi Kyeong Lee

    (US Department of Health and Human Services)

  • Natalie Terzikhan

    (Ghent University Hospital
    Erasmus University Medical Center)

  • Jennifer N. Nguyen

    (University of Virginia)

  • Lies Lahousse

    (Erasmus University Medical Center
    FFW, Ghent University)

  • Jeanne C. Latourelle

    (Boston University School of Medicine)

  • Albert Vernon Smith

    (Icelandic Heart Association
    Faculty of Medicine, University of Iceland
    University of Michigan)

  • Traci M. Bartz

    (University of Washington
    University of Washington)

  • Mary F. Feitosa

    (Washington University School of Medicine)

  • Wei Gao

    (Boston University School of Public Health)

  • Tarunveer S. Ahluwalia

    (Metabolic Genetics Section, Faculty of Health and Medical Sciences, University of Copenhagen
    Steno Diabetes Center Copenhagen)

  • Wenbo Tang

    (Cornell University)

  • Christopher Oldmeadow

    (Hunter Medical Research Institute and Faculty of Health, University of Newcastle)

  • Qing Duan

    (University of North Carolina)

  • Kim Jong

    (University of Groningen, University Medical Center Groningen)

  • Mary K. Wojczynski

    (Washington University School of Medicine)

  • Xin-Qun Wang

    (University of Virginia)

  • Raymond Noordam

    (Section Gerontology and Geriatrics, Leiden University Medical Center)

  • Fernando Pires Hartwig

    (Federal University of Pelotas
    School of Social and Community Medicine, University of Bristol)

  • Victoria E. Jackson

    (University of Leicester)

  • Tianyuan Wang

    (US Department of Health and Human Services)

  • Ma’en Obeidat

    (The University of British Columbia Center for Heart Lung Innovation, St Paul’s Hospital)

  • Brian D. Hobbs

    (Brigham and Women’s Hospital
    Brigham and Women’s Hospital)

  • Tianxiao Huan

    (Division of Intramural Research, National Heart, Lung, and Blood Institute)

  • Hongsheng Gui

    (Center for Health Policy and Health Services Research, Henry Ford Health System)

  • Margaret M. Parker

    (Brigham and Women’s Hospital)

  • Donglei Hu

    (School of Medicine, University of California San Francisco)

  • Lauren S. Mogil

    (Department of Biology, Loyola University Chicago)

  • Gleb Kichaev

    (University of California Los Angeles)

  • Jianping Jin

    (Westat)

  • Mariaelisa Graff

    (University of North Carolina)

  • Tamara B. Harris

    (Laboratory of Epidemiology and Population Sciences, National Institute on Aging, National Institutes of Health)

  • Ravi Kalhan

    (Northwestern University Feinberg School of Medicine)

  • Susan R. Heckbert

    (Cardiovascular Health Research Unit, University of Washington)

  • Lavinia Paternoster

    (School of Social and Community Medicine, University of Bristol)

  • Kristin M. Burkart

    (College of Physicians and Surgeons, Columbia University)

  • Yongmei Liu

    (Wake Forest School of Medicine)

  • Elizabeth G. Holliday

    (Hunter Medical Research Institute and Faculty of Health, University of Newcastle)

  • James G. Wilson

    (University of Mississippi Medical Center)

  • Judith M. Vonk

    (University of Groningen, University Medical Center Groningen)

  • Jason L. Sanders

    (Massachusetts General Hospital)

  • R. Graham Barr

    (College of Physicians and Surgeons, Columbia University
    Mailman School of Public Health, Columbia University)

  • Renée Mutsert

    (Leiden University Medical Center)

  • Ana Maria Baptista Menezes

    (Federal University of Pelotas)

  • Hieab H. H. Adams

    (Erasmus University Medical Center
    Erasmus University Medical Center)

  • Maarten Berge

    (University of Groningen, University Medical Center Groningen)

  • Roby Joehanes

    (Hebrew SeniorLife, Harvard University)

  • Albert M. Levin

    (Henry Ford Health System)

  • Jennifer Liberto

    (School of Medicine, University of California San Francisco)

  • Lenore J. Launer

    (Laboratory of Epidemiology and Population Sciences, National Institute on Aging, National Institutes of Health)

  • Alanna C. Morrison

    (Human Genetics, and Environmental Sciences, School of Public Health, The University of Texas Health Science Center at Houston)

  • Colleen M. Sitlani

    (University of Washington)

  • Juan C. Celedón

    (Children’s Hospital of Pittsburgh of UPMC, University of Pittsburgh)

  • Stephen B. Kritchevsky

    (Wake Forest School of Medicine)

  • Rodney J. Scott

    (Hunter Medical Research Institute and Faculty of Health, University of Newcastle
    Pathology North, NSW Health Pathology)

  • Kaare Christensen

    (Biostatistics and Biodemography, University of Southern Denmark)

  • Jerome I. Rotter

    (Institute for Translational Genomics and Population Sciences, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center)

  • Tobias N. Bonten

    (Leiden University Medical Center
    Leiden University Medical Center)

  • Fernando César Wehrmeister

    (Federal University of Pelotas)

  • Yohan Bossé

    (Institut Universitaire de Cardiologie et de Pneumologie de Québec, Laval University)

  • Shujie Xiao

    (Center for Health Policy and Health Services Research, Henry Ford Health System)

  • Sam Oh

    (School of Medicine, University of California San Francisco)

  • Nora Franceschini

    (University of North Carolina)

  • Jennifer A. Brody

    (University of Washington)

  • Robert C. Kaplan

    (Albert Einstein College of Medicine)

  • Kurt Lohman

    (Wake Forest School of Medicine)

  • Mark McEvoy

    (Hunter Medical Research Institute and Faculty of Health, University of Newcastle)

  • Michael A. Province

    (Washington University School of Medicine)

  • Frits R. Rosendaal

    (Leiden University Medical Center)

  • Kent D. Taylor

    (Institute for Translational Genomics and Population Sciences, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center)

  • David C. Nickle

    (Merck Research Laboratories, GpGx, Merck & Co., Inc.)

  • L. Keoki Williams

    (Center for Health Policy and Health Services Research, Henry Ford Health System
    Henry Ford Health System)

  • Esteban G. Burchard

    (School of Medicine, University of California San Francisco
    School of Pharmacy, University of California San Francisco)

  • Heather E. Wheeler

    (Department of Biology, Loyola University Chicago)

  • Don D. Sin

    (The University of British Columbia Center for Heart Lung Innovation, St Paul’s Hospital
    University of British Columbia)

  • Vilmundur Gudnason

    (Icelandic Heart Association
    Faculty of Medicine, University of Iceland)

  • Kari E. North

    (University of North Carolina)

  • Myriam Fornage

    (University of Texas Health Science Center at Houston)

  • Bruce M. Psaty

    (University of Washington
    Cardiovascular Health Research Unit, University of Washington
    University of Washington
    Kaiser Permanente Washington Health Research Institute)

  • Richard H. Myers

    (Boston University School of Medicine)

  • George O’Connor

    (National Heart, Lung, and Blood Institute’s Framingham Heart Study
    Boston University School of Medicine)

  • Torben Hansen

    (Metabolic Genetics Section, Faculty of Health and Medical Sciences, University of Copenhagen)

  • Cathy C. Laurie

    (University of Washington)

  • Patricia A. Cassano

    (Cornell University
    Weill Cornell Medical College)

  • Joohon Sung

    (School of Public Health, Seoul National University)

  • Woo Jin Kim

    (Kangwon National University)

  • John R. Attia

    (Hunter Medical Research Institute and Faculty of Health, University of Newcastle)

  • Leslie Lange

    (University of Colorado Denver)

  • H. Marike Boezen

    (University of Groningen, University Medical Center Groningen)

  • Bharat Thyagarajan

    (University of Minnesota)

  • Stephen S. Rich

    (University of Virginia)

  • Dennis O. Mook-Kanamori

    (Leiden University Medical Center
    Leiden University Medical Center)

  • Bernardo Lessa Horta

    (Federal University of Pelotas)

  • André G. Uitterlinden

    (Erasmus University Medical Center)

  • Hae Kyung Im

    (The University of Chicago)

  • Michael H. Cho

    (Brigham and Women’s Hospital
    Brigham and Women’s Hospital)

  • Guy G. Brusselle

    (Ghent University Hospital
    Erasmus University Medical Center
    Erasmus University Medical Center)

  • Sina A. Gharib

    (Computational Medicine Core, Center for Lung Biology, UW Medicine Sleep Center, University of Washington)

  • Josée Dupuis

    (Boston University School of Public Health
    National Heart, Lung, and Blood Institute’s Framingham Heart Study)

  • Ani Manichaikul

    (University of Virginia)

  • Stephanie J. London

    (US Department of Health and Human Services)

Abstract

Nearly 100 loci have been identified for pulmonary function, almost exclusively in studies of European ancestry populations. We extend previous research by meta-analyzing genome-wide association studies of 1000 Genomes imputed variants in relation to pulmonary function in a multiethnic population of 90,715 individuals of European (N = 60,552), African (N = 8429), Asian (N = 9959), and Hispanic/Latino (N = 11,775) ethnicities. We identify over 50 additional loci at genome-wide significance in ancestry-specific or multiethnic meta-analyses. Using recent fine-mapping methods incorporating functional annotation, gene expression, and differences in linkage disequilibrium between ethnicities, we further shed light on potential causal variants and genes at known and newly identified loci. Several of the novel genes encode proteins with predicted or established drug targets, including KCNK2 and CDK12. Our study highlights the utility of multiethnic and integrative genomics approaches to extend existing knowledge of the genetics of lung function and clinical relevance of implicated loci.

Suggested Citation

  • Annah B. Wyss & Tamar Sofer & Mi Kyeong Lee & Natalie Terzikhan & Jennifer N. Nguyen & Lies Lahousse & Jeanne C. Latourelle & Albert Vernon Smith & Traci M. Bartz & Mary F. Feitosa & Wei Gao & Tarunve, 2018. "Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:9:y:2018:i:1:d:10.1038_s41467-018-05369-0
    DOI: 10.1038/s41467-018-05369-0
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