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Out-of-equilibrium microcompartments for the bottom-up integration of metabolic functions

Author

Listed:
  • Thomas Beneyton

    (CNRS, Univ. Bordeaux, CRPP, UMR 5031)

  • Dorothee Krafft

    (Max Planck Institute for Dynamics of Complex Technical Systems)

  • Claudia Bednarz

    (Max Planck Institute for Dynamics of Complex Technical Systems)

  • Christin Kleineberg

    (Max Planck Institute for Dynamics of Complex Technical Systems)

  • Christian Woelfer

    (Max Planck Institute for Dynamics of Complex Technical Systems)

  • Ivan Ivanov

    (Max Planck Institute for Dynamics of Complex Technical Systems)

  • Tanja Vidaković-Koch

    (Max Planck Institute for Dynamics of Complex Technical Systems)

  • Kai Sundmacher

    (Max Planck Institute for Dynamics of Complex Technical Systems
    Otto-von-Guericke University, Process Systems Engineering)

  • Jean-Christophe Baret

    (CNRS, Univ. Bordeaux, CRPP, UMR 5031)

Abstract

Self-sustained metabolic pathways in microcompartments are the corner-stone for living systems. From a technological viewpoint, such pathways are a mandatory prerequisite for the reliable design of artificial cells functioning out-of-equilibrium. Here we develop a microfluidic platform for the miniaturization and analysis of metabolic pathways in man-made microcompartments formed of water-in-oil droplets. In a modular approach, we integrate in the microcompartments a nicotinamide adenine dinucleotide (NAD)-dependent enzymatic reaction and a NAD-regeneration module as a minimal metabolism. We show that the microcompartments sustain a metabolically active state until the substrate is fully consumed. Reversibly, the external addition of the substrate reboots the metabolic activity of the microcompartments back to an active state. We therefore control the metabolic state of thousands of independent monodisperse microcompartments, a step of relevance for the construction of large populations of metabolically active artificial cells.

Suggested Citation

  • Thomas Beneyton & Dorothee Krafft & Claudia Bednarz & Christin Kleineberg & Christian Woelfer & Ivan Ivanov & Tanja Vidaković-Koch & Kai Sundmacher & Jean-Christophe Baret, 2018. "Out-of-equilibrium microcompartments for the bottom-up integration of metabolic functions," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:9:y:2018:i:1:d:10.1038_s41467-018-04825-1
    DOI: 10.1038/s41467-018-04825-1
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    Cited by:

    1. Jin Li & William D. Jamieson & Pantelitsa Dimitriou & Wen Xu & Paul Rohde & Boris Martinac & Matthew Baker & Bruce W. Drinkwater & Oliver K. Castell & David A. Barrow, 2022. "Building programmable multicompartment artificial cells incorporating remotely activated protein channels using microfluidics and acoustic levitation," Nature Communications, Nature, vol. 13(1), pages 1-12, December.

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