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Quenching protein dynamics interferes with HIV capsid maturation

Author

Listed:
  • Mingzhang Wang

    (Department of Chemistry and Biochemistry, University of Delaware
    Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine)

  • Caitlin M. Quinn

    (Department of Chemistry and Biochemistry, University of Delaware
    Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine)

  • Juan R. Perilla

    (Department of Chemistry and Biochemistry, University of Delaware
    University of Illinois, Theoretical and Computational Biophysics Group)

  • Huilan Zhang

    (Department of Chemistry and Biochemistry, University of Delaware
    Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine)

  • Randall Shirra Jr.

    (Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine
    Department of Structural Biology, University of Pittsburgh School of Medicine)

  • Guangjin Hou

    (Department of Chemistry and Biochemistry, University of Delaware
    Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine)

  • In-Ja Byeon

    (Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine
    Department of Structural Biology, University of Pittsburgh School of Medicine)

  • Christopher L. Suiter

    (Department of Chemistry and Biochemistry, University of Delaware
    Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine)

  • Sherimay Ablan

    (HIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute)

  • Emiko Urano

    (HIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute)

  • Theodore J. Nitz

    (DFH Pharma)

  • Christopher Aiken

    (Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine
    Microbiology and Immunology, Vanderbilt University Medical Center)

  • Eric O. Freed

    (HIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute)

  • Peijun Zhang

    (Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine
    Department of Structural Biology, University of Pittsburgh School of Medicine
    Division of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington)

  • Klaus Schulten

    (University of Illinois, Theoretical and Computational Biophysics Group)

  • Angela M. Gronenborn

    (Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine
    Department of Structural Biology, University of Pittsburgh School of Medicine)

  • Tatyana Polenova

    (Department of Chemistry and Biochemistry, University of Delaware
    Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine)

Abstract

Maturation of HIV-1 particles encompasses a complex morphological transformation of Gag via an orchestrated series of proteolytic cleavage events. A longstanding question concerns the structure of the C-terminal region of CA and the peptide SP1 (CA–SP1), which represents an intermediate during maturation of the HIV-1 virus. By integrating NMR, cryo-EM, and molecular dynamics simulations, we show that in CA–SP1 tubes assembled in vitro, which represent the features of an intermediate assembly state during maturation, the SP1 peptide exists in a dynamic helix–coil equilibrium, and that the addition of the maturation inhibitors Bevirimat and DFH-055 causes stabilization of a helical form of SP1. Moreover, the maturation-arresting SP1 mutation T8I also induces helical structure in SP1 and further global dynamical and conformational changes in CA. Overall, our results show that dynamics of CA and SP1 are critical for orderly HIV-1 maturation and that small molecules can inhibit maturation by perturbing molecular motions.

Suggested Citation

  • Mingzhang Wang & Caitlin M. Quinn & Juan R. Perilla & Huilan Zhang & Randall Shirra Jr. & Guangjin Hou & In-Ja Byeon & Christopher L. Suiter & Sherimay Ablan & Emiko Urano & Theodore J. Nitz & Christo, 2017. "Quenching protein dynamics interferes with HIV capsid maturation," Nature Communications, Nature, vol. 8(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:8:y:2017:i:1:d:10.1038_s41467-017-01856-y
    DOI: 10.1038/s41467-017-01856-y
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    Cited by:

    1. Sucharita Sarkar & Kaneil K. Zadrozny & Roman Zadorozhnyi & Ryan W. Russell & Caitlin M. Quinn & Alex Kleinpeter & Sherimay Ablan & Hamed Meshkin & Juan R. Perilla & Eric O. Freed & Barbie K. Ganser-P, 2023. "Structural basis of HIV-1 maturation inhibitor binding and activity," Nature Communications, Nature, vol. 14(1), pages 1-13, December.

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