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The asparagus genome sheds light on the origin and evolution of a young Y chromosome

Author

Listed:
  • Alex Harkess

    (University of Georgia
    Donald Danforth Plant Science Center)

  • Jinsong Zhou

    (Jiangxi Academy of Agricultural Sciences)

  • Chunyan Xu

    (BGI-Shenzhen)

  • John E. Bowers

    (University of Georgia)

  • Ron Hulst

    (Limgroup B.V.)

  • Saravanaraj Ayyampalayam

    (University of Georgia)

  • Francesco Mercati

    (Università Mediterranea degli Studi di Reggio Calabria
    National Research Council)

  • Paolo Riccardi

    (Research Unit for Vegetable Crops
    Bayer)

  • Michael R. McKain

    (Donald Danforth Plant Science Center
    University of Alabama)

  • Atul Kakrana

    (University of Delaware)

  • Haibao Tang

    (Fujian Agriculture and Forestry University)

  • Jeremy Ray

    (University of Georgia)

  • John Groenendijk

    (Green Acres Life Science)

  • Siwaret Arikit

    (University of Delaware
    Kasetsart University)

  • Sandra M. Mathioni

    (Donald Danforth Plant Science Center
    University of Delaware)

  • Mayumi Nakano

    (Donald Danforth Plant Science Center
    University of Delaware)

  • Hongyan Shan

    (Chinese Academy of Sciences)

  • Alexa Telgmann-Rauber

    (University of Georgia
    KWS SAAT AG)

  • Akira Kanno

    (Tohoku University)

  • Zhen Yue

    (BGI-Shenzhen)

  • Haixin Chen

    (BGI-Shenzhen)

  • Wenqi Li

    (BGI-Shenzhen)

  • Yanling Chen

    (BGI-Shenzhen)

  • Xiangyang Xu

    (BGI-Shenzhen)

  • Yueping Zhang

    (Jiangxi Academy of Agricultural Sciences)

  • Shaochun Luo

    (Jiangxi Academy of Agricultural Sciences)

  • Helong Chen

    (Chinese Academy of Tropical Agricultural Sciences)

  • Jianming Gao

    (Chinese Academy of Tropical Agriculture Sciences)

  • Zichao Mao

    (Yunnan Agricultural University)

  • J. Chris Pires

    (University of Missouri)

  • Meizhong Luo

    (Huazhong Agricultural University)

  • Dave Kudrna

    (School of Plant Sciences and Department of Ecology and Evolutionary Biology)

  • Rod A. Wing

    (School of Plant Sciences and Department of Ecology and Evolutionary Biology)

  • Blake C. Meyers

    (Donald Danforth Plant Science Center
    University of Delaware)

  • Kexian Yi

    (Chinese Academy of Tropical Agricultural Sciences
    Chinese Academy of Tropical Agriculture Sciences)

  • Hongzhi Kong

    (Chinese Academy of Sciences)

  • Pierre Lavrijsen

    (Limgroup B.V.)

  • Francesco Sunseri

    (Università Mediterranea degli Studi di Reggio Calabria)

  • Agostino Falavigna

    (Research Unit for Vegetable Crops
    Blumen Group S.p.A.)

  • Yin Ye

    (BGI-Shenzhen
    Dalian University of Technology
    University of Copenhagen)

  • James H. Leebens-Mack

    (University of Georgia)

  • Guangyu Chen

    (Jiangxi Academy of Agricultural Sciences)

Abstract

Sex chromosomes evolved from autosomes many times across the eukaryote phylogeny. Several models have been proposed to explain this transition, some involving male and female sterility mutations linked in a region of suppressed recombination between X and Y (or Z/W, U/V) chromosomes. Comparative and experimental analysis of a reference genome assembly for a double haploid YY male garden asparagus (Asparagus officinalis L.) individual implicates separate but linked genes as responsible for sex determination. Dioecy has evolved recently within Asparagus and sex chromosomes are cytogenetically identical with the Y, harboring a megabase segment that is missing from the X. We show that deletion of this entire region results in a male-to-female conversion, whereas loss of a single suppressor of female development drives male-to-hermaphrodite conversion. A single copy anther-specific gene with a male sterile Arabidopsis knockout phenotype is also in the Y-specific region, supporting a two-gene model for sex chromosome evolution.

Suggested Citation

  • Alex Harkess & Jinsong Zhou & Chunyan Xu & John E. Bowers & Ron Hulst & Saravanaraj Ayyampalayam & Francesco Mercati & Paolo Riccardi & Michael R. McKain & Atul Kakrana & Haibao Tang & Jeremy Ray & Jo, 2017. "The asparagus genome sheds light on the origin and evolution of a young Y chromosome," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
    • Handle: RePEc:nat:natcom:v:8:y:2017:i:1:d:10.1038_s41467-017-01064-8
    DOI: 10.1038/s41467-017-01064-8
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    Cited by:

    1. Victoria L. Sork & Shawn J. Cokus & Sorel T. Fitz-Gibbon & Aleksey V. Zimin & Daniela Puiu & Jesse A. Garcia & Paul F. Gugger & Claudia L. Henriquez & Ying Zhen & Kirk E. Lohmueller & Matteo Pellegrin, 2022. "High-quality genome and methylomes illustrate features underlying evolutionary success of oaks," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    2. Pat Iocco-Corena & Jamila Chaïb & Laurent Torregrosa & Don Mackenzie & Mark R. Thomas & Harley M. Smith, 2021. "VviPLATZ1 is a major factor that controls female flower morphology determination in grapevine," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
    3. Jessen V. Bredeson & Jessica B. Lyons & Ibukun O. Oniyinde & Nneka R. Okereke & Olufisayo Kolade & Ikenna Nnabue & Christian O. Nwadili & Eva Hřibová & Matthew Parker & Jeremiah Nwogha & Shengqiang Sh, 2022. "Chromosome evolution and the genetic basis of agronomically important traits in greater yam," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    4. Nanqiao Liao & Zhongyuan Hu & Jinshan Miao & Xiaodi Hu & Xiaolong Lyu & Haitian Fang & Yi-Mei Zhou & Ahmed Mahmoud & Guancong Deng & Yi-Qing Meng & Kejia Zhang & Yu-Yuan Ma & Yuelin Xia & Meng Zhao & , 2022. "Chromosome-level genome assembly of bunching onion illuminates genome evolution and flavor formation in Allium crops," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    5. Xing Guo & Fang Wang & Dongming Fang & Qiongqiong Lin & Sunil Kumar Sahu & Liuming Luo & Jiani Li & Yewen Chen & Shanshan Dong & Sisi Chen & Yang Liu & Shixiao Luo & Yalong Guo & Huan Liu, 2023. "The genome of Acorus deciphers insights into early monocot evolution," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    6. Alessia Russo & Mattia Alessandrini & Moaine El Baidouri & Daniel Frei & Teresa Rosa Galise & Lara Gaidusch & Hannah F. Oertel & Sara E. Garcia Morales & Giacomo Potente & Qin Tian & Dmitry Smetanin &, 2024. "Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    7. Liang Ma & Ke-Wei Liu & Zhen Li & Yu-Yun Hsiao & Yiying Qi & Tao Fu & Guang-Da Tang & Diyang Zhang & Wei-Hong Sun & Ding-Kun Liu & Yuanyuan Li & Gui-Zhen Chen & Xue-Die Liu & Xing-Yu Liao & Yu-Ting Ji, 2023. "Diploid and tetraploid genomes of Acorus and the evolution of monocots," Nature Communications, Nature, vol. 14(1), pages 1-18, December.

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