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Inactivation of Pol θ and C-NHEJ eliminates off-target integration of exogenous DNA

Author

Listed:
  • Alex N. Zelensky

    (Erasmus University Medical Centre)

  • Joost Schimmel

    (Leiden University Medical Centre)

  • Hanneke Kool

    (Leiden University Medical Centre)

  • Roland Kanaar

    (Erasmus University Medical Centre)

  • Marcel Tijsterman

    (Leiden University Medical Centre)

Abstract

Off-target or random integration of exogenous DNA hampers precise genomic engineering and presents a safety risk in clinical gene therapy strategies. Genetic definition of random integration has been lacking for decades. Here, we show that the A-family DNA polymerase θ (Pol θ) promotes random integration, while canonical non-homologous DNA end joining plays a secondary role; cells double deficient for polymerase θ and canonical non-homologous DNA end joining are devoid of any integration events, demonstrating that these two mechanisms define random integration. In contrast, homologous recombination is not reduced in these cells and gene targeting is improved to 100% efficiency. Such complete reversal of integration outcome, from predominately random integration to exclusively gene targeting, provides a rational way forward to improve the efficacy and safety of DNA delivery and gene correction approaches.

Suggested Citation

  • Alex N. Zelensky & Joost Schimmel & Hanneke Kool & Roland Kanaar & Marcel Tijsterman, 2017. "Inactivation of Pol θ and C-NHEJ eliminates off-target integration of exogenous DNA," Nature Communications, Nature, vol. 8(1), pages 1-7, December.
    • Handle: RePEc:nat:natcom:v:8:y:2017:i:1:d:10.1038_s41467-017-00124-3
    DOI: 10.1038/s41467-017-00124-3
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    Cited by:

    1. Alba Muniesa-Vargas & Carlota Davó-Martínez & Cristina Ribeiro-Silva & Melanie van der Woude & Karen L. Thijssen & Ben Haspels & David Häckes & Ülkem U. Kaynak & Roland Kanaar & Jurgen A. Marteijn & A, 2024. "Persistent TFIIH binding to non-excised DNA damage causes cell and developmental failure," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    2. Shinta Saito & Noritaka Adachi, 2024. "Characterization and regulation of cell cycle-independent noncanonical gene targeting," Nature Communications, Nature, vol. 15(1), pages 1-13, December.

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