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Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics

Author

Listed:
  • Mohammad Moniruzzaman

    (The University of Tennessee)

  • Louie L. Wurch

    (James Madison University)

  • Harriet Alexander

    (Columbia University)

  • Sonya T. Dyhrman

    (Columbia University)

  • Christopher J. Gobler

    (School of Marine and Atmospheric Sciences, Stony Brook University)

  • Steven W. Wilhelm

    (The University of Tennessee)

Abstract

Establishing virus–host relationships has historically relied on culture-dependent approaches. Here we report on the use of marine metatranscriptomics to probe virus–host relationships. Statistical co-occurrence analyses of dsDNA, ssRNA and dsRNA viral markers of polyadenylation-selected RNA sequences from microbial communities dominated by Aureococcus anophagefferens (Quantuck Bay, NY), and diatoms (Narragansett Bay, RI) show active infections by diverse giant viruses (NCLDVs) associated with algal and nonalgal hosts. Ongoing infections of A. anophagefferens by a known Mimiviridae (AaV) occur during bloom peak and decline. Bloom decline is also accompanied by increased activity of viruses other than AaV, including (+) ssRNA viruses. In Narragansett Bay, increased temporal resolution reveals active NCLDVs with both ‘boom-and-bust’ and ‘steady-state infection’-like ecologies that include known as well as novel virus–host interactions. Our approach offers a method for screening active viral infections and develops links between viruses and their potential hosts in situ. Our observations further demonstrate that previously unknown virus–host relationships in marine systems are abundant.

Suggested Citation

  • Mohammad Moniruzzaman & Louie L. Wurch & Harriet Alexander & Sonya T. Dyhrman & Christopher J. Gobler & Steven W. Wilhelm, 2017. "Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
    • Handle: RePEc:nat:natcom:v:8:y:2017:i:1:d:10.1038_ncomms16054
    DOI: 10.1038/ncomms16054
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    Cited by:

    1. Hanpeng Liao & Chen Liu & Shungui Zhou & Chunqin Liu & David J. Eldridge & Chaofan Ai & Steven W. Wilhelm & Brajesh K. Singh & Xiaolong Liang & Mark Radosevich & Qiu-e Yang & Xiang Tang & Zhong Wei & , 2024. "Prophage-encoded antibiotic resistance genes are enriched in human-impacted environments," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    2. Sofia Rigou & Sébastien Santini & Chantal Abergel & Jean-Michel Claverie & Matthieu Legendre, 2022. "Past and present giant viruses diversity explored through permafrost metagenomics," Nature Communications, Nature, vol. 13(1), pages 1-13, December.

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