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Allosteric modulation of peroxisomal membrane protein recognition by farnesylation of the peroxisomal import receptor PEX19

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  • Leonidas Emmanouilidis

    (Institute of Structural Biology, Helmholtz Zentrum München
    Munich Center for Integrated Protein Science at Chair of Biomolecular NMR, Technische Universität München)

  • Ulrike Schütz

    (Institute of Structural Biology, Helmholtz Zentrum München
    Munich Center for Integrated Protein Science at Chair of Biomolecular NMR, Technische Universität München)

  • Konstantinos Tripsianes

    (CEITEC—Central European Institute of Technology, Masaryk University)

  • Tobias Madl

    (Institute of Structural Biology, Helmholtz Zentrum München
    Munich Center for Integrated Protein Science at Chair of Biomolecular NMR, Technische Universität München
    Institute of Molecular Biology and Biochemisty, Medical University of Graz)

  • Juliane Radke

    (Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, Ruhr University Bochum)

  • Robert Rucktäschel

    (Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, Ruhr University Bochum)

  • Matthias Wilmanns

    (EMBL Hamburg)

  • Wolfgang Schliebs

    (Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, Ruhr University Bochum)

  • Ralf Erdmann

    (Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, Ruhr University Bochum)

  • Michael Sattler

    (Institute of Structural Biology, Helmholtz Zentrum München
    Munich Center for Integrated Protein Science at Chair of Biomolecular NMR, Technische Universität München)

Abstract

The transport of peroxisomal membrane proteins (PMPs) requires the soluble PEX19 protein as chaperone and import receptor. Recognition of cargo PMPs by the C-terminal domain (CTD) of PEX19 is required for peroxisome biogenesis in vivo. Farnesylation at a C-terminal CaaX motif in PEX19 enhances the PMP interaction, but the underlying molecular mechanisms are unknown. Here, we report the NMR-derived structure of the farnesylated human PEX19 CTD, which reveals that the farnesyl moiety is buried in an internal hydrophobic cavity. This induces substantial conformational changes that allosterically reshape the PEX19 surface to form two hydrophobic pockets for the recognition of conserved aromatic/aliphatic side chains in PMPs. Mutations of PEX19 residues that either mediate farnesyl contacts or are directly involved in PMP recognition abolish cargo binding and cannot complement a ΔPEX19 phenotype in human Zellweger patient fibroblasts. Our results demonstrate an allosteric mechanism for the modulation of protein function by farnesylation.

Suggested Citation

  • Leonidas Emmanouilidis & Ulrike Schütz & Konstantinos Tripsianes & Tobias Madl & Juliane Radke & Robert Rucktäschel & Matthias Wilmanns & Wolfgang Schliebs & Ralf Erdmann & Michael Sattler, 2017. "Allosteric modulation of peroxisomal membrane protein recognition by farnesylation of the peroxisomal import receptor PEX19," Nature Communications, Nature, vol. 8(1), pages 1-13, April.
  • Handle: RePEc:nat:natcom:v:8:y:2017:i:1:d:10.1038_ncomms14635
    DOI: 10.1038/ncomms14635
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    Cited by:

    1. Dzmitry Ashkinadze & Harindranath Kadavath & Aditya Pokharna & Celestine N. Chi & Michael Friedmann & Dean Strotz & Pratibha Kumari & Martina Minges & Riccardo Cadalbert & Stefan Königl & Peter Günter, 2022. "Atomic resolution protein allostery from the multi-state structure of a PDZ domain," Nature Communications, Nature, vol. 13(1), pages 1-10, December.

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