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Potent and selective chemical probe of hypoxic signalling downstream of HIF-α hydroxylation via VHL inhibition

Author

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  • Julianty Frost

    (School of Life Sciences, University of Dundee)

  • Carles Galdeano

    (School of Life Sciences, University of Dundee
    Present address: Facultat de Farmàcia, Universitat de Barcelona, Av. Joan XXIII 27-31, 08028 Barcelona, Spain)

  • Pedro Soares

    (School of Life Sciences, University of Dundee)

  • Morgan S. Gadd

    (School of Life Sciences, University of Dundee)

  • Katarzyna M. Grzes

    (School of Life Sciences, University of Dundee)

  • Lucy Ellis

    (School of Life Sciences, University of Dundee)

  • Ola Epemolu

    (School of Life Sciences, University of Dundee)

  • Satoko Shimamura

    (Cellzome GmbH)

  • Marcus Bantscheff

    (Cellzome GmbH)

  • Paola Grandi

    (Cellzome GmbH)

  • Kevin D. Read

    (School of Life Sciences, University of Dundee)

  • Doreen A. Cantrell

    (School of Life Sciences, University of Dundee)

  • Sonia Rocha

    (Center for Gene Regulation and Expression, School of Life Sciences, University of Dundee)

  • Alessio Ciulli

    (School of Life Sciences, University of Dundee)

Abstract

Chemical strategies to using small molecules to stimulate hypoxia inducible factors (HIFs) activity and trigger a hypoxic response under normoxic conditions, such as iron chelators and inhibitors of prolyl hydroxylase domain (PHD) enzymes, have broad-spectrum activities and off-target effects. Here we disclose VH298, a potent VHL inhibitor that stabilizes HIF-α and elicits a hypoxic response via a different mechanism, that is the blockade of the VHL:HIF-α protein–protein interaction downstream of HIF-α hydroxylation by PHD enzymes. We show that VH298 engages with high affinity and specificity with VHL as its only major cellular target, leading to selective on-target accumulation of hydroxylated HIF-α in a concentration- and time-dependent fashion in different cell lines, with subsequent upregulation of HIF-target genes at both mRNA and protein levels. VH298 represents a high-quality chemical probe of the HIF signalling cascade and an attractive starting point to the development of potential new therapeutics targeting hypoxia signalling.

Suggested Citation

  • Julianty Frost & Carles Galdeano & Pedro Soares & Morgan S. Gadd & Katarzyna M. Grzes & Lucy Ellis & Ola Epemolu & Satoko Shimamura & Marcus Bantscheff & Paola Grandi & Kevin D. Read & Doreen A. Cantr, 2016. "Potent and selective chemical probe of hypoxic signalling downstream of HIF-α hydroxylation via VHL inhibition," Nature Communications, Nature, vol. 7(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:7:y:2016:i:1:d:10.1038_ncomms13312
    DOI: 10.1038/ncomms13312
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    Cited by:

    1. Olena S. Tokareva & Kunhua Li & Tara L. Travaline & Ty M. Thomson & Jean-Marie Swiecicki & Mahmoud Moussa & Jessica D. Ramirez & Sean Litchman & Gregory L. Verdine & John H. McGee, 2023. "Recognition and reprogramming of E3 ubiquitin ligase surfaces by α-helical peptides," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    2. Sarath Ramachandran & Nikolai Makukhin & Kevin Haubrich & Manjula Nagala & Beth Forrester & Dylan M. Lynch & Ryan Casement & Andrea Testa & Elvira Bruno & Rosaria Gitto & Alessio Ciulli, 2023. "Structure-based design of a phosphotyrosine-masked covalent ligand targeting the E3 ligase SOCS2," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    3. Misty Shuo Zhang & Jane Di Cui & Derek Lee & Vincent Wai-Hin Yuen & David Kung-Chun Chiu & Chi Ching Goh & Jacinth Wing-Sum Cheu & Aki Pui-Wah Tse & Macus Hao-Ran Bao & Bowie Po Yee Wong & Carrie Yili, 2022. "Hypoxia-induced macropinocytosis represents a metabolic route for liver cancer," Nature Communications, Nature, vol. 13(1), pages 1-19, December.

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