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Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

Author

Listed:
  • Takuma Hashimoto

    (Graduate School of Science, The University of Tokyo)

  • Daiki D. Horikawa

    (Graduate School of Science, The University of Tokyo
    Graduate School of Environmental Earth Science, Hokkaido University
    Institute for Advanced Biosciences, Keio University)

  • Yuki Saito

    (Graduate School of Science, The University of Tokyo)

  • Hirokazu Kuwahara

    (Graduate School of Science, The University of Tokyo
    Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology)

  • Hiroko Kozuka-Hata

    (Medical Proteomics Laboratory, Institute of Medical Science, The University of Tokyo)

  • Tadasu Shin-I

    (Genome Biology Laboratory, National Institute of Genetics)

  • Yohei Minakuchi

    (Comparative Genomics Laboratory, National Institute of Genetics)

  • Kazuko Ohishi

    (Genome Biology Laboratory, National Institute of Genetics)

  • Ayuko Motoyama

    (Comparative Genomics Laboratory, National Institute of Genetics)

  • Tomoyuki Aizu

    (Comparative Genomics Laboratory, National Institute of Genetics)

  • Atsushi Enomoto

    (Laboratory of Molecular Radiology, Graduate School of Medicine, The University of Tokyo)

  • Koyuki Kondo

    (Graduate School of Science, The University of Tokyo)

  • Sae Tanaka

    (Graduate School of Science, The University of Tokyo)

  • Yuichiro Hara

    (Phyloinformatics Unit, RIKEN Center for Life Science Technologies)

  • Shigeyuki Koshikawa

    (Laboratory of Ecological Genetics, Graduate School of Environmental Science, Hokkaido University
    The Hakubi Center for Advanced Research and Graduate School of Science, Kyoto University)

  • Hiroshi Sagara

    (Medical Proteomics Laboratory, Institute of Medical Science, The University of Tokyo)

  • Toru Miura

    (Laboratory of Ecological Genetics, Graduate School of Environmental Science, Hokkaido University)

  • Shin-ichi Yokobori

    (Laboratory of Extremophiles, School of Life Sciences, Tokyo University of Pharmacy and Life Sciences)

  • Kiyoshi Miyagawa

    (Laboratory of Molecular Radiology, Graduate School of Medicine, The University of Tokyo)

  • Yutaka Suzuki

    (Graduate School of Frontier Sciences, The University of Tokyo)

  • Takeo Kubo

    (Graduate School of Science, The University of Tokyo)

  • Masaaki Oyama

    (Medical Proteomics Laboratory, Institute of Medical Science, The University of Tokyo)

  • Yuji Kohara

    (Genome Biology Laboratory, National Institute of Genetics)

  • Asao Fujiyama

    (Comparative Genomics Laboratory, National Institute of Genetics
    SOKENDAI (The Graduate University for Advanced Studies))

  • Kazuharu Arakawa

    (Institute for Advanced Biosciences, Keio University)

  • Toshiaki Katayama

    (Database Center for Life Science)

  • Atsushi Toyoda

    (Comparative Genomics Laboratory, National Institute of Genetics)

  • Takekazu Kunieda

    (Graduate School of Science, The University of Tokyo)

Abstract

Tardigrades, also known as water bears, are small aquatic animals. Some tardigrade species tolerate almost complete dehydration and exhibit extraordinary tolerance to various physical extremes in the dehydrated state. Here we determine a high-quality genome sequence of Ramazzottius varieornatus, one of the most stress-tolerant tardigrade species. Precise gene repertoire analyses reveal the presence of a small proportion (1.2% or less) of putative foreign genes, loss of gene pathways that promote stress damage, expansion of gene families related to ameliorating damage, and evolution and high expression of novel tardigrade-unique proteins. Minor changes in the gene expression profiles during dehydration and rehydration suggest constitutive expression of tolerance-related genes. Using human cultured cells, we demonstrate that a tardigrade-unique DNA-associating protein suppresses X-ray-induced DNA damage by ∼40% and improves radiotolerance. These findings indicate the relevance of tardigrade-unique proteins to tolerability and tardigrades could be a bountiful source of new protection genes and mechanisms.

Suggested Citation

  • Takuma Hashimoto & Daiki D. Horikawa & Yuki Saito & Hirokazu Kuwahara & Hiroko Kozuka-Hata & Tadasu Shin-I & Yohei Minakuchi & Kazuko Ohishi & Ayuko Motoyama & Tomoyuki Aizu & Atsushi Enomoto & Koyuki, 2016. "Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein," Nature Communications, Nature, vol. 7(1), pages 1-14, November.
  • Handle: RePEc:nat:natcom:v:7:y:2016:i:1:d:10.1038_ncomms12808
    DOI: 10.1038/ncomms12808
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    Cited by:

    1. Emilien Nicolas & Paul Simion & Marc Guérineau & Matthieu Terwagne & Mathilde Colinet & Julie Virgo & Maxime Lingurski & Anaïs Boutsen & Marc Dieu & Bernard Hallet & Karine Doninck, 2023. "Horizontal acquisition of a DNA ligase improves DNA damage tolerance in eukaryotes," Nature Communications, Nature, vol. 14(1), pages 1-14, December.

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