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Giraffe genome sequence reveals clues to its unique morphology and physiology

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  • Morris Agaba

    (School of Life Sciences and Bioengineering, African Institute of Science and Technology
    Biosciences Eastern and Central Africa, International Livestock Research Institute
    Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University)

  • Edson Ishengoma

    (School of Life Sciences and Bioengineering, African Institute of Science and Technology)

  • Webb C. Miller

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University)

  • Barbara C. McGrath

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University)

  • Chelsea N. Hudson

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University)

  • Oscar C. Bedoya Reina

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University
    MRC Functional Genomics Unit, Anatomy and Genetics, University of Oxford)

  • Aakrosh Ratan

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University
    Center for Public Health Genomics, University of Virginia)

  • Rico Burhans

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University)

  • Rayan Chikhi

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University
    Pennsylvania State University)

  • Paul Medvedev

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University
    Pennsylvania State University)

  • Craig A. Praul

    (Huck Institutes of the Life Sciences, Pennsylvania State University, University Park)

  • Lan Wu-Cavener

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University)

  • Brendan Wood

    (Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University)

  • Heather Robertson

    (Nashville Zoo at Grassmere)

  • Linda Penfold

    (White Oak Holdings)

  • Douglas R. Cavener

    (School of Life Sciences and Bioengineering, African Institute of Science and Technology
    Center for Genomics and Bioinformatics, Huck Institutes of the Life Sciences, Pennsylvania State University)

Abstract

The origins of giraffe’s imposing stature and associated cardiovascular adaptations are unknown. Okapi, which lacks these unique features, is giraffe’s closest relative and provides a useful comparison, to identify genetic variation underlying giraffe’s long neck and cardiovascular system. The genomes of giraffe and okapi were sequenced, and through comparative analyses genes and pathways were identified that exhibit unique genetic changes and likely contribute to giraffe’s unique features. Some of these genes are in the HOX, NOTCH and FGF signalling pathways, which regulate both skeletal and cardiovascular development, suggesting that giraffe’s stature and cardiovascular adaptations evolved in parallel through changes in a small number of genes. Mitochondrial metabolism and volatile fatty acids transport genes are also evolutionarily diverged in giraffe and may be related to its unusual diet that includes toxic plants. Unexpectedly, substantial evolutionary changes have occurred in giraffe and okapi in double-strand break repair and centrosome functions.

Suggested Citation

  • Morris Agaba & Edson Ishengoma & Webb C. Miller & Barbara C. McGrath & Chelsea N. Hudson & Oscar C. Bedoya Reina & Aakrosh Ratan & Rico Burhans & Rayan Chikhi & Paul Medvedev & Craig A. Praul & Lan Wu, 2016. "Giraffe genome sequence reveals clues to its unique morphology and physiology," Nature Communications, Nature, vol. 7(1), pages 1-8, September.
  • Handle: RePEc:nat:natcom:v:7:y:2016:i:1:d:10.1038_ncomms11519
    DOI: 10.1038/ncomms11519
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