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Frequent alterations in cytoskeleton remodelling genes in primary and metastatic lung adenocarcinomas

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Listed:
  • Kui Wu

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    National Clinical Research Center for Respiratory Disease)

  • Xin Zhang

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    National Clinical Research Center for Respiratory Disease)

  • Fuqiang Li

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Dakai Xiao

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    Research Center for Translational Medicine, The First Affiliated Hospital of Guangzhou Medical University)

  • Yong Hou

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    University of Copenhagen)

  • Shida Zhu

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    University of Copenhagen)

  • Dongbing Liu

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Xiaofei Ye

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    Karolinska Institutet)

  • Mingzhi Ye

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou)

  • Jie Yang

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Libin Shao

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Hui Pan

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    Research Center for Translational Medicine, The First Affiliated Hospital of Guangzhou Medical University)

  • Na Lu

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Yuan Yu

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Liping Liu

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    Research Center for Translational Medicine, The First Affiliated Hospital of Guangzhou Medical University)

  • Jin Li

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    Research Center for Translational Medicine, The First Affiliated Hospital of Guangzhou Medical University)

  • Liyan Huang

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease)

  • Hailing Tang

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease)

  • Qiuhua Deng

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    Research Center for Translational Medicine, The First Affiliated Hospital of Guangzhou Medical University)

  • Yue Zheng

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Lihua Peng

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Geng Liu

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Xia Gu

    (The First Affiliated Hospital of Guangzhou Medical University)

  • Ping He

    (The First Affiliated Hospital of Guangzhou Medical University)

  • Yingying Gu

    (Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    The First Affiliated Hospital of Guangzhou Medical University)

  • Weixuan Lin

    (Research Center for Translational Medicine, The First Affiliated Hospital of Guangzhou Medical University)

  • Huiming He

    (Research Center for Translational Medicine, The First Affiliated Hospital of Guangzhou Medical University)

  • Guoyun Xie

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Han Liang

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Na An

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Hui Wang

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Manuel Teixeira

    (Portuguese Oncology Institute)

  • Joana Vieira

    (Portuguese Oncology Institute)

  • Wenhua Liang

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    National Clinical Research Center for Respiratory Disease)

  • Xin Zhao

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Zhiyu Peng

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou)

  • Feng Mu

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    BGI-Wuhan)

  • Xiuqing Zhang

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou)

  • Xun Xu

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China)

  • Huanming Yang

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    James D. Watson Institute of Genome Sciences, Zhejiang University)

  • Karsten Kristiansen

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    The First Affiliated Hospital of Guangzhou Medical University)

  • Jian Wang

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    James D. Watson Institute of Genome Sciences, Zhejiang University)

  • Nanshan Zhong

    (Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    National Clinical Research Center for Respiratory Disease)

  • Jun Wang

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    University of Copenhagen)

  • Qiang Pan-Hammarström

    (BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
    Karolinska Institutet)

  • Jianxing He

    (The First Affiliated Hospital of Guangzhou Medical University
    Guangzhou Institute of Respiratory Disease & State Key Laboratory of Respiratory Disease
    National Clinical Research Center for Respiratory Disease)

Abstract

The landscape of genetic alterations in lung adenocarcinoma derived from Asian patients is largely uncharacterized. Here we present an integrated genomic and transcriptomic analysis of 335 primary lung adenocarcinomas and 35 corresponding lymph node metastases from Chinese patients. Altogether 13 significantly mutated genes are identified, including the most commonly mutated gene TP53 and novel mutation targets such as RHPN2, GLI3 and MRC2. TP53 mutations are furthermore significantly enriched in tumours from patients harbouring metastases. Genes regulating cytoskeleton remodelling processes are also frequently altered, especially in metastatic samples, of which the high expression level of IQGAP3 is identified as a marker for poor prognosis. Our study represents the first large-scale sequencing effort on lung adenocarcinoma in Asian patients and provides a comprehensive mutational landscape for both primary and metastatic tumours. This may thus form a basis for personalized medical care and shed light on the molecular pathogenesis of metastatic lung adenocarcinoma.

Suggested Citation

  • Kui Wu & Xin Zhang & Fuqiang Li & Dakai Xiao & Yong Hou & Shida Zhu & Dongbing Liu & Xiaofei Ye & Mingzhi Ye & Jie Yang & Libin Shao & Hui Pan & Na Lu & Yuan Yu & Liping Liu & Jin Li & Liyan Huang & H, 2015. "Frequent alterations in cytoskeleton remodelling genes in primary and metastatic lung adenocarcinomas," Nature Communications, Nature, vol. 6(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:6:y:2015:i:1:d:10.1038_ncomms10131
    DOI: 10.1038/ncomms10131
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