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Video frame interpolation neural network for 3D tomography across different length scales

Author

Listed:
  • Laura Gambini

    (Trinity College Dublin
    Trinity College Dublin)

  • Cian Gabbett

    (Trinity College Dublin
    Trinity College Dublin)

  • Luke Doolan

    (Trinity College Dublin
    Trinity College Dublin)

  • Lewys Jones

    (Trinity College Dublin
    Trinity College Dublin
    Trinity College Dublin)

  • Jonathan N. Coleman

    (Trinity College Dublin
    Trinity College Dublin)

  • Paddy Gilligan

    (Mater Misericordiae University Hospital)

  • Stefano Sanvito

    (Trinity College Dublin
    Trinity College Dublin)

Abstract

Three-dimensional (3D) tomography is a powerful investigative tool for many scientific domains, going from materials science, to engineering, to medicine. Many factors may limit the 3D resolution, often spatially anisotropic, compromising the precision of the information retrievable. A neural network, designed for video-frame interpolation, is employed to enhance tomographic images, achieving cubic-voxel resolution. The method is applied to distinct domains: the investigation of the morphology of printed graphene nanosheets networks, obtained via focused ion beam-scanning electron microscope (FIB-SEM), magnetic resonance imaging of the human brain, and X-ray computed tomography scans of the abdomen. The accuracy of the 3D tomographic maps can be quantified through computer-vision metrics, but most importantly with the precision on the physical quantities retrievable from the reconstructions, in the case of FIB-SEM the porosity, tortuosity, and effective diffusivity. This work showcases a versatile image-augmentation strategy for optimizing 3D tomography acquisition conditions, while preserving the information content.

Suggested Citation

  • Laura Gambini & Cian Gabbett & Luke Doolan & Lewys Jones & Jonathan N. Coleman & Paddy Gilligan & Stefano Sanvito, 2024. "Video frame interpolation neural network for 3D tomography across different length scales," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-52260-2
    DOI: 10.1038/s41467-024-52260-2
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    1. Cian Gabbett & Luke Doolan & Kevin Synnatschke & Laura Gambini & Emmet Coleman & Adam G. Kelly & Shixin Liu & Eoin Caffrey & Jose Munuera & Catriona Murphy & Stefano Sanvito & Lewys Jones & Jonathan N, 2024. "Quantitative analysis of printed nanostructured networks using high-resolution 3D FIB-SEM nanotomography," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
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