IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-45272-5.html
   My bibliography  Save this article

Choreographing root architecture and rhizosphere interactions through synthetic biology

Author

Listed:
  • Carin J. Ragland

    (Stanford University)

  • Kevin Y. Shih

    (Stanford University)

  • José R. Dinneny

    (Stanford University)

Abstract

Climate change is driving extreme changes to the environment, posing substantial threats to global food security and bioenergy. Given the direct role of plant roots in mediating plant-environment interactions, engineering the form and function of root systems and their associated microbiota may mitigate these effects. Synthetic genetic circuits have enabled sophisticated control of gene expression in microbial systems for years and a surge of advances has heralded the extension of this approach to multicellular plant species. Targeting these tools to affect root structure, exudation, and microbe activity on root surfaces provide multiple strategies for the advancement of climate-ready crops.

Suggested Citation

  • Carin J. Ragland & Kevin Y. Shih & José R. Dinneny, 2024. "Choreographing root architecture and rhizosphere interactions through synthetic biology," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45272-5
    DOI: 10.1038/s41467-024-45272-5
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-45272-5
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-45272-5?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Yang Bai & Daniel B. Müller & Girish Srinivas & Ruben Garrido-Oter & Eva Potthoff & Matthias Rott & Nina Dombrowski & Philipp C. Münch & Stijn Spaepen & Mitja Remus-Emsermann & Bruno Hüttel & Alice C., 2015. "Functional overlap of the Arabidopsis leaf and root microbiota," Nature, Nature, vol. 528(7582), pages 364-369, December.
    2. Sarah Guiziou & Cassandra J. Maranas & Jonah C. Chu & Jennifer L. Nemhauser, 2023. "An integrase toolbox to record gene-expression during plant development," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    3. Bruno Guillotin & Ramin Rahni & Michael Passalacqua & Mohammed Ateequr Mohammed & Xiaosa Xu & Sunil Kenchanmane Raju & Carlos Ortiz Ramírez & David Jackson & Simon C. Groen & Jesse Gillis & Kenneth D., 2023. "A pan-grass transcriptome reveals patterns of cellular divergence in crops," Nature, Nature, vol. 617(7962), pages 785-791, May.
    4. Sarah McLaughlin & Kateryna Zhalnina & Suzanne Kosina & Trent R. Northen & Joelle Sasse, 2023. "The core metabolome and root exudation dynamics of three phylogenetically distinct plant species," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    5. Huseyin Tas & Lewis Grozinger & Ruud Stoof & Victor de Lorenzo & Ángel Goñi-Moreno, 2021. "Contextual dependencies expand the re-usability of genetic inverters," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    6. Barney A. Geddes & Ponraj Paramasivan & Amelie Joffrin & Amber L. Thompson & Kirsten Christensen & Beatriz Jorrin & Paul Brett & Stuart J. Conway & Giles E. D. Oldroyd & Philip S. Poole, 2019. "Engineering transkingdom signalling in plants to control gene expression in rhizosphere bacteria," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
    7. Kyle Mason-Jones & Andreas Breidenbach & Jens Dyckmans & Callum C. Banfield & Michaela A. Dippold, 2023. "Intracellular carbon storage by microorganisms is an overlooked pathway of biomass growth," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Shikai La & Jiafan Li & Si Ma & Xingqun Liu & Lihong Gao & Yongqiang Tian, 2024. "Protective role of native root-associated bacterial consortium against root-knot nematode infection in susceptible plants," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    2. Xin Zhou & Jinting Wang & Fang Liu & Junmin Liang & Peng Zhao & Clement K. M. Tsui & Lei Cai, 2022. "Cross-kingdom synthetic microbiota supports tomato suppression of Fusarium wilt disease," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    3. Lucas Hemmerle & Benjamin A. Maier & Miriam Bortfeld-Miller & Birgitta Ryback & Christoph G. Gäbelein & Martin Ackermann & Julia A. Vorholt, 2022. "Dynamic character displacement among a pair of bacterial phyllosphere commensals in situ," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    4. Zhaohui Cao & Wenlong Zuo & Lanxiang Wang & Junyu Chen & Zepeng Qu & Fan Jin & Lei Dai, 2023. "Spatial profiling of microbial communities by sequential FISH with error-robust encoding," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    5. Benjamin H. Good & Layton B. Rosenfeld, 2023. "Eco-evolutionary feedbacks in the human gut microbiome," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    6. Cassandra J. Maranas & Wesley George & Sarah K. Scallon & Sydney VanGilder & Jennifer L. Nemhauser & Sarah Guiziou, 2024. "A history-dependent integrase recorder of plant gene expression with single-cell resolution," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    7. Barbara Emmenegger & Julien Massoni & Christine M. Pestalozzi & Miriam Bortfeld-Miller & Benjamin A. Maier & Julia A. Vorholt, 2023. "Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    8. Li Fan & Katja Fröhlich & Eric Melzer & Rory N. Pruitt & Isabell Albert & Lisha Zhang & Anna Joe & Chenlei Hua & Yanyue Song & Markus Albert & Sang-Tae Kim & Detlef Weigel & Cyril Zipfel & Eunyoung Ch, 2022. "Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    9. Lige Ma & Yu Luo & Chen Chen & Huan Luo & Shuqi Wang & Yue Yuan & Wenhua Yang & Can Liu & Xulv Cao & Nannan Li, 2023. "Bacterial Strategies for Improving the Yield, Quality, and Adaptability of Oil Crops," Agriculture, MDPI, vol. 14(1), pages 1-29, December.
    10. Guy Amit & Amir Bashan, 2023. "Top-down identification of keystone taxa in the microbiome," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    11. Mingxing Wang & An-Hui Ge & Xingzhu Ma & Xiaolin Wang & Qiujin Xie & Like Wang & Xianwei Song & Mengchen Jiang & Weibing Yang & Jeremy D. Murray & Yayu Wang & Huan Liu & Xiaofeng Cao & Ertao Wang, 2024. "Dynamic root microbiome sustains soybean productivity under unbalanced fertilization," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    12. Alice Boo & Tyler Toth & Qiguo Yu & Alexander Pfotenhauer & Brandon D. Fields & Scott C. Lenaghan & C. Neal Stewart & Christopher A. Voigt, 2024. "Synthetic microbe-to-plant communication channels," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    13. Jing Liang & Jiafan Zhang & Zongmu Yao & Shouyang Luo & Lei Tian & Chunjie Tian & Yu Sun, 2022. "Preliminary Findings of Polypropylene Carbonate (PPC) Plastic Film Mulching Effects on the Soil Microbial Community," Agriculture, MDPI, vol. 12(3), pages 1-13, March.
    14. Ke Tao & Ib T. Jensen & Sha Zhang & Eber Villa-Rodríguez & Zuzana Blahovska & Camilla Lind Salomonsen & Anna Martyn & Þuríður Nótt Björgvinsdóttir & Simon Kelly & Luc Janss & Marianne Glasius & Rasmus, 2024. "Nitrogen and Nod factor signaling determine Lotus japonicus root exudate composition and bacterial assembly," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    15. Chengjia Tan & Mohammad Talib Kalhoro & Yahya Faqir & Jiahua Ma & Matthew Duah Osei & Ghulam Khaliq, 2022. "Climate-Resilient Microbial Biotechnology: A Perspective on Sustainable Agriculture," Sustainability, MDPI, vol. 14(9), pages 1-29, May.
    16. Frederickson Entila & Xiaowei Han & Akira Mine & Paul Schulze-Lefert & Kenichi Tsuda, 2024. "Commensal lifestyle regulated by a negative feedback loop between Arabidopsis ROS and the bacterial T2SS," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    17. Nathan Vannier & Fantin Mesny & Felix Getzke & Guillaume Chesneau & Laura Dethier & Jana Ordon & Thorsten Thiergart & Stéphane Hacquard, 2023. "Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    18. Felix Getzke & Lei Wang & Guillaume Chesneau & Nils Böhringer & Fantin Mesny & Nienke Denissen & Hidde Wesseler & Priscilla Tijesuni Adisa & Michael Marner & Paul Schulze-Lefert & Till F. Schäberle & , 2024. "Physiochemical interaction between osmotic stress and a bacterial exometabolite promotes plant disease," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    19. Lisa Thoenen & Marco Kreuzer & Christine Pestalozzi & Matilde Florean & Pierre Mateo & Tobias Züst & Anlun Wei & Caitlin Giroud & Liza Rouyer & Valentin Gfeller & Matheus D. Notter & Eva Knoch & Siegf, 2024. "The lactonase BxdA mediates metabolic specialisation of maize root bacteria to benzoxazinoids," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    20. Carmen Escudero-Martinez & Max Coulter & Rodrigo Alegria Terrazas & Alexandre Foito & Rumana Kapadia & Laura Pietrangelo & Mauro Maver & Rajiv Sharma & Alessio Aprile & Jenny Morris & Pete E. Hedley &, 2022. "Identifying plant genes shaping microbiota composition in the barley rhizosphere," Nature Communications, Nature, vol. 13(1), pages 1-14, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45272-5. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.