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Late-stage synthesis of heterobifunctional molecules for PROTAC applications via ruthenium-catalysed C‒H amidation

Author

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  • Daniele Antermite

    (Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca)

  • Stig D. Friis

    (Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca)

  • Johan R. Johansson

    (Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca)

  • Okky Dwichandra Putra

    (Pharmaceutical Sciences R&D, AstraZeneca)

  • Lutz Ackermann

    (Georg-August-Universität Göttingen
    German Center for Cardiovascular Research (DZHK))

  • Magnus J. Johansson

    (Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca)

Abstract

PROteolysis TArgeting Chimeras (PROTACs) are heterobifunctional molecules emerging as a powerful modality in drug discovery, with the potential to address outstanding medical challenges. However, the synthetic feasibility of PROTACs, and the empiric and complex nature of their structure-activity relationships continue to present formidable limitations. As such, modular and reliable approaches to streamline the synthesis of these derivatives are highly desirable. Here, we describe a robust ruthenium-catalysed late-stage C‒H amidation strategy, to access fully elaborated heterobifunctional compounds. Using readily available dioxazolone reagents, a broad range of inherently present functional groups can guide the C–H amidation on complex bioactive molecules. High selectivity and functional group tolerance enable the late-stage installation of linkers bearing orthogonal functional handles for downstream elaboration. Finally, the single-step synthesis of both CRBN and biotin conjugates is demonstrated, showcasing the potential of this methodology to provide efficient and sustainable access to advanced therapeutics and chemical biology tools.

Suggested Citation

  • Daniele Antermite & Stig D. Friis & Johan R. Johansson & Okky Dwichandra Putra & Lutz Ackermann & Magnus J. Johansson, 2023. "Late-stage synthesis of heterobifunctional molecules for PROTAC applications via ruthenium-catalysed C‒H amidation," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43789-9
    DOI: 10.1038/s41467-023-43789-9
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    References listed on IDEAS

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    1. Fenglei Li & Qiaoyu Hu & Xianglei Zhang & Renhong Sun & Zhuanghua Liu & Sanan Wu & Siyuan Tian & Xinyue Ma & Zhizhuo Dai & Xiaobao Yang & Shenghua Gao & Fang Bai, 2022. "DeepPROTACs is a deep learning-based targeted degradation predictor for PROTACs," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
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