IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-41452-x.html
   My bibliography  Save this article

Whole-genome screens reveal regulators of differentiation state and context-dependent migration in human neutrophils

Author

Listed:
  • Nathan M. Belliveau

    (University of Washington)

  • Matthew J. Footer

    (University of Washington)

  • Emel Akdoǧan

    (University of California, Davis)

  • Aaron P. Loon

    (University of Washington)

  • Sean R. Collins

    (University of California, Davis)

  • Julie A. Theriot

    (University of Washington)

Abstract

Neutrophils are the most abundant leukocyte in humans and provide a critical early line of defense as part of our innate immune system. We perform a comprehensive, genome-wide assessment of the molecular factors critical to proliferation, differentiation, and cell migration in a neutrophil-like cell line. Through the development of multiple migration screen strategies, we specifically probe directed (chemotaxis), undirected (chemokinesis), and 3D amoeboid cell migration in these fast-moving cells. We identify a role for mTORC1 signaling in cell differentiation, which influences neutrophil abundance, survival, and migratory behavior. Across our individual migration screens, we identify genes involved in adhesion-dependent and adhesion-independent cell migration, protein trafficking, and regulation of the actomyosin cytoskeleton. This genome-wide screening strategy, therefore, provides an invaluable approach to the study of neutrophils and provides a resource that will inform future studies of cell migration in these and other rapidly migrating cells.

Suggested Citation

  • Nathan M. Belliveau & Matthew J. Footer & Emel Akdoǧan & Aaron P. Loon & Sean R. Collins & Julie A. Theriot, 2023. "Whole-genome screens reveal regulators of differentiation state and context-dependent migration in human neutrophils," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41452-x
    DOI: 10.1038/s41467-023-41452-x
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-41452-x
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-41452-x?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Pardis Pakshir & Moien Alizadehgiashi & Boaz Wong & Nuno Miranda Coelho & Xingyu Chen & Ze Gong & Vivek B. Shenoy & Christopher A. McCulloch & Boris Hinz, 2019. "Dynamic fibroblast contractions attract remote macrophages in fibrillar collagen matrix," Nature Communications, Nature, vol. 10(1), pages 1-17, December.
    2. Amalia Hadjitheodorou & George R. R. Bell & Felix Ellett & Shashank Shastry & Daniel Irimia & Sean R. Collins & Julie A. Theriot, 2021. "Directional reorientation of migrating neutrophils is limited by suppression of receptor input signaling at the cell rear through myosin II activity," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    3. Roarke A. Kamber & Yoko Nishiga & Bhek Morton & Allison M. Banuelos & Amira A. Barkal & Felipe Vences-Catalán & Mingxin Gu & Daniel Fernandez & Jose A. Seoane & David Yao & Katherine Liu & Sijie Lin &, 2021. "Inter-cellular CRISPR screens reveal regulators of cancer cell phagocytosis," Nature, Nature, vol. 597(7877), pages 549-554, September.
    4. Kendall R. Sanson & Ruth E. Hanna & Mudra Hegde & Katherine F. Donovan & Christine Strand & Meagan E. Sullender & Emma W. Vaimberg & Amy Goodale & David E. Root & Federica Piccioni & John G. Doench, 2018. "Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
    5. Claus Metzner & Christoph Mark & Julian Steinwachs & Lena Lautscham & Franz Stadler & Ben Fabry, 2015. "Superstatistical analysis and modelling of heterogeneous random walks," Nature Communications, Nature, vol. 6(1), pages 1-8, November.
    6. Min Zhao & Bing Song & Jin Pu & Teiji Wada & Brian Reid & Guangping Tai & Fei Wang & Aihua Guo & Petr Walczysko & Yu Gu & Takehiko Sasaki & Akira Suzuki & John V. Forrester & Henry R. Bourne & Peter N, 2006. "Electrical signals control wound healing through phosphatidylinositol-3-OH kinase-γ and PTEN," Nature, Nature, vol. 442(7101), pages 457-460, July.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Tatsat Banerjee & Satomi Matsuoka & Debojyoti Biswas & Yuchuan Miao & Dhiman Sankar Pal & Yoichiro Kamimura & Masahiro Ueda & Peter N. Devreotes & Pablo A. Iglesias, 2023. "A dynamic partitioning mechanism polarizes membrane protein distribution," Nature Communications, Nature, vol. 14(1), pages 1-24, December.
    2. Chih-Wei Chou & Chia-Nung Hung & Cheryl Hsiang-Ling Chiu & Xi Tan & Meizhen Chen & Chien-Chin Chen & Moawiz Saeed & Che-Wei Hsu & Michael A. Liss & Chiou-Miin Wang & Zhao Lai & Nathaniel Alvarez & Paw, 2023. "Phagocytosis-initiated tumor hybrid cells acquire a c-Myc-mediated quasi-polarization state for immunoevasion and distant dissemination," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
    3. Sean A. Misek & Aaron Fultineer & Jeremie Kalfon & Javad Noorbakhsh & Isabella Boyle & Priyanka Roy & Joshua Dempster & Lia Petronio & Katherine Huang & Alham Saadat & Thomas Green & Adam Brown & John, 2024. "Germline variation contributes to false negatives in CRISPR-based experiments with varying burden across ancestries," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    4. Chen Dong & Shuhua Fu & Rowan M. Karvas & Brian Chew & Laura A. Fischer & Xiaoyun Xing & Jessica K. Harrison & Pooja Popli & Ramakrishna Kommagani & Ting Wang & Bo Zhang & Thorold W. Theunissen, 2022. "A genome-wide CRISPR-Cas9 knockout screen identifies essential and growth-restricting genes in human trophoblast stem cells," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    5. Yudong Gao & Daichi Shonai & Matthew Trn & Jieqing Zhao & Erik J. Soderblom & S. Alexandra Garcia-Moreno & Charles A. Gersbach & William C. Wetsel & Geraldine Dawson & Dmitry Velmeshev & Yong-hui Jian, 2024. "Proximity analysis of native proteomes reveals phenotypic modifiers in a mouse model of autism and related neurodevelopmental conditions," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    6. Xuan Zhang & Yujing Wang & Shreyas Supekar & Xu Cao & Jingkai Zhou & Jessica Dang & Siqi Chen & Laura Jenkins & Sara Marsango & Xiu Li & Guibing Liu & Graeme Milligan & Mingye Feng & Hao Fan & Weimin , 2023. "Pro-phagocytic function and structural basis of GPR84 signaling," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    7. Eoin McEvoy & Tal Sneh & Emad Moeendarbary & Yousef Javanmardi & Nadia Efimova & Changsong Yang & Gloria E. Marino-Bravante & Xingyu Chen & Jorge Escribano & Fabian Spill & José Manuel Garcia-Aznar & , 2022. "Feedback between mechanosensitive signaling and active forces governs endothelial junction integrity," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    8. Toman, Kellan & Voulgarakis, Nikolaos K., 2022. "Stochastic pursuit-evasion curves for foraging dynamics," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 597(C).
    9. Gravanis, E. & Akylas, E., 2021. "Blackbody radiation, kappa distribution and superstatistics," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 578(C).
    10. Vicky Chou & Richard V. Pearse & Aimee J. Aylward & Nancy Ashour & Mariko Taga & Gizem Terzioglu & Masashi Fujita & Seeley B. Fancher & Alina Sigalov & Courtney R. Benoit & Hyo Lee & Matti Lam & Nicho, 2023. "INPP5D regulates inflammasome activation in human microglia," Nature Communications, Nature, vol. 14(1), pages 1-23, December.
    11. Teressa M. Shaw & Devra Huey & Makky Mousa-Makky & Jared Compaleo & Kylie Nennig & Aadit P. Shah & Fei Jiang & Xueer Qiu & Devon Klipsic & Raymond R. R. Rowland & Igor I. Slukvin & Meagan E. Sullender, 2024. "The neonatal Fc receptor (FcRn) is a pan-arterivirus receptor," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    12. Jeremy J. Ratiu & William E. Barclay & Elliot Lin & Qun Wang & Sebastian Wellford & Naren Mehta & Melissa J. Harnois & Devon DiPalma & Sumedha Roy & Alejandra V. Contreras & Mari L. Shinohara & David , 2022. "Loss of Zfp335 triggers cGAS/STING-dependent apoptosis of post-β selection thymocytes," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
    13. Fei Li & Yizhe Wang & Inah Hwang & Ja-Young Jang & Libo Xu & Zhong Deng & Eun Young Yu & Yiming Cai & Caizhi Wu & Zhenbo Han & Yu-Han Huang & Xiangao Huang & Ling Zhang & Jun Yao & Neal F. Lue & Paul , 2023. "Histone demethylase KDM2A is a selective vulnerability of cancers relying on alternative telomere maintenance," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    14. Yandan Yang & Arnold Bolomsky & Thomas Oellerich & Ping Chen & Michele Ceribelli & Björn Häupl & George W. Wright & James D. Phelan & Da Wei Huang & James W. Lord & Callie K. Winkle & Xin Yu & Jan Wis, 2022. "Oncogenic RAS commandeers amino acid sensing machinery to aberrantly activate mTORC1 in multiple myeloma," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    15. Yong Yean Kim & Berkley E. Gryder & Ranuka Sinniah & Megan L. Peach & Jack F. Shern & Abdalla Abdelmaksoud & Silvia Pomella & Girma M. Woldemichael & Benjamin Z. Stanton & David Milewski & Joseph J. B, 2024. "KDM3B inhibitors disrupt the oncogenic activity of PAX3-FOXO1 in fusion-positive rhabdomyosarcoma," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
    16. Yanli Liu & Zhong Wu & Jin Zhou & Dinesh K. A. Ramadurai & Katelyn L. Mortenson & Estrella Aguilera-Jimenez & Yifei Yan & Xiaojun Yang & Alison M. Taylor & Katherine E. Varley & Jason Gertz & Peter S., 2021. "A predominant enhancer co-amplified with the SOX2 oncogene is necessary and sufficient for its expression in squamous cancer," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    17. Guang Yao & Xiaoyi Mo & Shanshan Liu & Qian Wang & Maowen Xie & Wenhao Lou & Shiyan Chen & Taisong Pan & Ke Chen & Dezhong Yao & Yuan Lin, 2023. "Snowflake-inspired and blink-driven flexible piezoelectric contact lenses for effective corneal injury repair," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    18. Pengcheng Shang & Joshua D. Simpson & Gwen M. Taylor & Danica M. Sutherland & Olivia L. Welsh & Pavithra Aravamudhan & Rita Dos Santos Natividade & Kristina Schwab & Joshua J. Michel & Amanda C. Pohol, 2023. "Paired immunoglobulin-like receptor B is an entry receptor for mammalian orthoreovirus," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    19. Jianting Shi & Xun Wu & Ziyi Wang & Fang Li & Yujiao Meng & Rebecca M. Moore & Jian Cui & Chenyi Xue & Katherine R. Croce & Arif Yurdagul & John G. Doench & Wei Li & Konstantinos S. Zarbalis & Ira Tab, 2022. "A genome-wide CRISPR screen identifies WDFY3 as a regulator of macrophage efferocytosis," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    20. George R. R. Bell & Esther Rincón & Emel Akdoğan & Sean R. Collins, 2021. "Optogenetic control of receptors reveals distinct roles for actin- and Cdc42-dependent negative signals in chemotactic signal processing," Nature Communications, Nature, vol. 12(1), pages 1-14, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41452-x. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.