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Cellular state landscape and herpes simplex virus type 1 infection progression are connected

Author

Listed:
  • Maija K. Pietilä

    (University of Zurich)

  • Jana J. Bachmann

    (University of Zurich)

  • Janne Ravantti

    (University of Helsinki)

  • Lucas Pelkmans

    (University of Zurich)

  • Cornel Fraefel

    (University of Zurich)

Abstract

Prediction, prevention and treatment of virus infections require understanding of cell-to-cell variability that leads to heterogenous disease outcomes, but the source of this heterogeneity has yet to be clarified. To study the multimodal response of single human cells to herpes simplex virus type 1 (HSV-1) infection, we mapped high-dimensional viral and cellular state spaces throughout the infection using multiplexed imaging and quantitative single-cell measurements of viral and cellular mRNAs and proteins. Here we show that the high-dimensional cellular state scape can predict heterogenous infections, and cells move through the cellular state landscape according to infection progression. Spatial information reveals that infection changes the cellular state of both infected cells and of their neighbors. The multiplexed imaging of HSV-1-induced cellular modifications links infection progression to changes in signaling responses, transcriptional activity, and processing bodies. Our data show that multiplexed quantification of responses at the single-cell level, across thousands of cells helps predict infections and identify new targets for antivirals.

Suggested Citation

  • Maija K. Pietilä & Jana J. Bachmann & Janne Ravantti & Lucas Pelkmans & Cornel Fraefel, 2023. "Cellular state landscape and herpes simplex virus type 1 infection progression are connected," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
    • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40148-6
    DOI: 10.1038/s41467-023-40148-6
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    References listed on IDEAS

    as
    1. Berend Snijder & Raphael Sacher & Pauli Rämö & Eva-Maria Damm & Prisca Liberali & Lucas Pelkmans, 2009. "Population context determines cell-to-cell variability in endocytosis and virus infection," Nature, Nature, vol. 461(7263), pages 520-523, September.
    2. Emanuel Wyler & Vedran Franke & Jennifer Menegatti & Christine Kocks & Anastasiya Boltengagen & Samantha Praktiknjo & Barbara Walch-Rückheim & Jens Bosse & Nikolaus Rajewsky & Friedrich Grässer & Altu, 2019. "Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program," Nature Communications, Nature, vol. 10(1), pages 1-14, December.
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