High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-023-38324-9
Download full text from publisher
References listed on IDEAS
- Ashley Byrne & Anna E. Beaudin & Hugh E. Olsen & Miten Jain & Charles Cole & Theron Palmer & Rebecca M. DuBois & E. Camilla Forsberg & Mark Akeson & Christopher Vollmers, 2017. "Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells," Nature Communications, Nature, vol. 8(1), pages 1-11, December.
- Kevin Lebrigand & Virginie Magnone & Pascal Barbry & Rainer Waldmann, 2020. "High throughput error corrected Nanopore single cell transcriptome sequencing," Nature Communications, Nature, vol. 11(1), pages 1-8, December.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Shuyao Zhang & Yuhua Xiao & Xinzhi Mo & Xu Chen & Jiawei Zhong & Zheyao Chen & Xu Liu & Yuanhui Qiu & Wangxuan Dai & Jia Chen & Xishan Jin & Guoping Fan & Youjin Hu, 2024. "Simultaneous profiling of RNA isoforms and chromatin accessibility of single cells of human retinal organoids," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Ashley Byrne & Daniel Le & Kostianna Sereti & Hari Menon & Samir Vaidya & Neha Patel & Jessica Lund & Ana Xavier-Magalhães & Minyi Shi & Yuxin Liang & Timothy Sterne-Weiler & Zora Modrusan & William S, 2024. "Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Arthur Dondi & Ulrike Lischetti & Francis Jacob & Franziska Singer & Nico Borgsmüller & Ricardo Coelho & Viola Heinzelmann-Schwarz & Christian Beisel & Niko Beerenwinkel, 2023. "Detection of isoforms and genomic alterations by high-throughput full-length single-cell RNA sequencing in ovarian cancer," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Ashley Byrne & Daniel Le & Kostianna Sereti & Hari Menon & Samir Vaidya & Neha Patel & Jessica Lund & Ana Xavier-Magalhães & Minyi Shi & Yuxin Liang & Timothy Sterne-Weiler & Zora Modrusan & William S, 2024. "Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Livius Penter & Mehdi Borji & Adi Nagler & Haoxiang Lyu & Wesley S. Lu & Nicoletta Cieri & Katie Maurer & Giacomo Oliveira & Aziz M. Al’Khafaji & Kiran V. Garimella & Shuqiang Li & Donna S. Neuberg & , 2024. "Integrative genotyping of cancer and immune phenotypes by long-read sequencing," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Yu Wang & Zhi-Ying Guan & Shao-Wen Shi & Yi-Rong Jiang & Jie Zhang & Yi Yang & Qiong Wu & Jie Wu & Jian-Bo Chen & Wei-Xin Ying & Qin-Qin Xu & Qian-Xi Fan & Hui-Feng Wang & Li Zhou & Ling Wang & Jin Fa, 2024. "Pick-up single-cell proteomic analysis for quantifying up to 3000 proteins in a Mammalian cell," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Angeles Arzalluz-Luque & Pedro Salguero & Sonia Tarazona & Ana Conesa, 2022. "acorde unravels functionally interpretable networks of isoform co-usage from single cell data," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
- Jasim Kada Benotmane & Jan Kueckelhaus & Paulina Will & Junyi Zhang & Vidhya M. Ravi & Kevin Joseph & Roman Sankowski & Jürgen Beck & Catalina Lee-Chang & Oliver Schnell & Dieter Henrik Heiland, 2023. "High-sensitive spatially resolved T cell receptor sequencing with SPTCR-seq," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Cheng-Kai Shiau & Lina Lu & Rachel Kieser & Kazutaka Fukumura & Timothy Pan & Hsiao-Yun Lin & Jie Yang & Eric L. Tong & GaHyun Lee & Yuanqing Yan & Jason T. Huse & Ruli Gao, 2023. "High throughput single cell long-read sequencing analyses of same-cell genotypes and phenotypes in human tumors," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
- Michal Kabza & Alexander Ritter & Ashley Byrne & Kostianna Sereti & Daniel Le & William Stephenson & Timothy Sterne-Weiler, 2024. "Accurate long-read transcript discovery and quantification at single-cell, pseudo-bulk and bulk resolution with Isosceles," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Shuyao Zhang & Yuhua Xiao & Xinzhi Mo & Xu Chen & Jiawei Zhong & Zheyao Chen & Xu Liu & Yuanhui Qiu & Wangxuan Dai & Jia Chen & Xishan Jin & Guoping Fan & Youjin Hu, 2024. "Simultaneous profiling of RNA isoforms and chromatin accessibility of single cells of human retinal organoids," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38324-9. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.