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Accurate determination of solvation free energies of neutral organic compounds from first principles

Author

Listed:
  • Leonid Pereyaslavets

    (InterX Inc)

  • Ganesh Kamath

    (InterX Inc)

  • Oleg Butin

    (InterX Inc)

  • Alexey Illarionov

    (InterX Inc)

  • Michael Olevanov

    (InterX Inc
    Lomonosov Moscow State University)

  • Igor Kurnikov

    (InterX Inc)

  • Serzhan Sakipov

    (InterX Inc)

  • Igor Leontyev

    (InterX Inc)

  • Ekaterina Voronina

    (InterX Inc
    Lomonosov Moscow State University)

  • Tyler Gannon

    (InterX Inc)

  • Grzegorz Nawrocki

    (InterX Inc)

  • Mikhail Darkhovskiy

    (InterX Inc)

  • Ilya Ivahnenko

    (InterX Inc)

  • Alexander Kostikov

    (InterX Inc)

  • Jessica Scaranto

    (Carnegie Mellon University)

  • Maria G. Kurnikova

    (Carnegie Mellon University)

  • Suvo Banik

    (Center for Nanoscale Materials, Argonne National Lab
    University of Illinois)

  • Henry Chan

    (Center for Nanoscale Materials, Argonne National Lab
    University of Illinois)

  • Michael G. Sternberg

    (Center for Nanoscale Materials, Argonne National Lab)

  • Subramanian K. R. S. Sankaranarayanan

    (Center for Nanoscale Materials, Argonne National Lab
    University of Illinois)

  • Brad Crawford

    (Wayne State University)

  • Jeffrey Potoff

    (Wayne State University)

  • Michael Levitt

    (Stanford University School of Medicine)

  • Roger D. Kornberg

    (Stanford University School of Medicine)

  • Boris Fain

    (InterX Inc)

Abstract

The main goal of molecular simulation is to accurately predict experimental observables of molecular systems. Another long-standing goal is to devise models for arbitrary neutral organic molecules with little or no reliance on experimental data. While separately these goals have been met to various degrees, for an arbitrary system of molecules they have not been achieved simultaneously. For biophysical ensembles that exist at room temperature and pressure, and where the entropic contributions are on par with interaction strengths, it is the free energies that are both most important and most difficult to predict. We compute the free energies of solvation for a diverse set of neutral organic compounds using a polarizable force field fitted entirely to ab initio calculations. The mean absolute errors (MAE) of hydration, cyclohexane solvation, and corresponding partition coefficients are 0.2 kcal/mol, 0.3 kcal/mol and 0.22 log units, i.e. within chemical accuracy. The model (ARROW FF) is multipolar, polarizable, and its accompanying simulation stack includes nuclear quantum effects (NQE). The simulation tools’ computational efficiency is on a par with current state-of-the-art packages. The construction of a wide-coverage molecular modelling toolset from first principles, together with its excellent predictive ability in the liquid phase is a major advance in biomolecular simulation.

Suggested Citation

  • Leonid Pereyaslavets & Ganesh Kamath & Oleg Butin & Alexey Illarionov & Michael Olevanov & Igor Kurnikov & Serzhan Sakipov & Igor Leontyev & Ekaterina Voronina & Tyler Gannon & Grzegorz Nawrocki & Mik, 2022. "Accurate determination of solvation free energies of neutral organic compounds from first principles," Nature Communications, Nature, vol. 13(1), pages 1-7, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28041-0
    DOI: 10.1038/s41467-022-28041-0
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