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Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering

Author

Listed:
  • Yunbeom Lee

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Jong Goo Kim

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Sang Jin Lee

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Srinivasan Muniyappan

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Tae Wu Kim

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Hosung Ki

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Hanui Kim

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Junbeom Jo

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • So Ri Yun

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Hyosub Lee

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Kyung Won Lee

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Seong Ok Kim

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

  • Marco Cammarata

    (European Synchrotron Radiation Facility)

  • Hyotcherl Ihee

    (Korea Advanced Institute of Science and Technology (KAIST)
    Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS))

Abstract

Ultrafast motion of molecules, particularly the coherent motion, has been intensively investigated as a key factor guiding the reaction pathways. Recently, X-ray free-electron lasers (XFELs) have been utilized to elucidate the ultrafast motion of molecules. However, the studies on proteins using XFELs have been typically limited to the crystalline phase, and proteins in solution have rarely been investigated. Here we applied femtosecond time-resolved X-ray solution scattering (fs-TRXSS) and a structure refinement method to visualize the ultrafast motion of a protein. We succeeded in revealing detailed ultrafast structural changes of homodimeric hemoglobin involving the coherent motion. In addition to the motion of the protein itself, the time-dependent change of electron density of the hydration shell was tracked. Besides, the analysis on the fs-TRXSS data of myoglobin allows for observing the effect of the oligomeric state on the ultrafast coherent motion.

Suggested Citation

  • Yunbeom Lee & Jong Goo Kim & Sang Jin Lee & Srinivasan Muniyappan & Tae Wu Kim & Hosung Ki & Hanui Kim & Junbeom Jo & So Ri Yun & Hyosub Lee & Kyung Won Lee & Seong Ok Kim & Marco Cammarata & Hyotcher, 2021. "Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-23947-7
    DOI: 10.1038/s41467-021-23947-7
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